miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48336_bna-miR156a:pmrd
Length = 82
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacaaaagtaatctgcatatactgcatttgcttctcttgcgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacacaaaagtaatctgcatatactgcatttgcttctcttgcgtgc 63
Query: 61 tcactgctctttctg 75
|||||||||||||||
Sbjct: 64 tcactgctctttctg 78
>46910_ath-miR156a:pmrd
Length = 123
Score = 95.6 bits (48), Expect = 4e-21
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacaaaagtaatctgcatat-actgcatttgcttctcttgcgtg 59
|||||||||||||||||||||| | ||| ||||||| | |||| ||||||||||||||||
Sbjct: 24 cagaagagagtgagcacacaaaggcaatttgcatatcattgcacttgcttctcttgcgtg 83
Query: 60 ctcactgctctttctg 75
||||||||||||||||
Sbjct: 84 ctcactgctctttctg 99
>46912_ath-miR156c:pmrd
Length = 104
Score = 75.8 bits (38), Expect = 4e-15
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacaaaagtaatctgcatatac--tgcatttgcttctcttgcgt 58
|||||||||||||||||||||| | | | ||||| | | ||||||||||||||||||||
Sbjct: 15 cagaagagagtgagcacacaaaggcactttgcatgttcgatgcatttgcttctcttgcgt 74
Query: 59 gctcactgctctttctg 75
|||||||||||| ||||
Sbjct: 75 gctcactgctctatctg 91
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacaaa 22
||||||||||||||||||||||
Sbjct: 9 cagaagagagtgagcacacaaa 30
>46913_ath-miR156d:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacaaa 22
||||||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacacaaa 42
>54918_zma-miR156h:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gcgtgctcactgctctttctg 75
|||||||||||||||||||||
Sbjct: 74 gcgtgctcactgctctttctg 94
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 23 cagaagagagtgagcacac 41
>54400_sbi-miR156h:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gcgtgctcactgctctttctg 75
|||||||||||||||||||||
Sbjct: 67 gcgtgctcactgctctttctg 87
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacac 23
>48805_osa-miR156e:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 gcgtgctcactgctctttctg 75
|||||||||||||||||||||
Sbjct: 72 gcgtgctcactgctctttctg 92
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 13 cagaagagagtgagcacac 31
>54924_zma-miR156o:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>54922_zma-miR156m:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>54913_zma-miR156c:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>54912_zma-miR156b:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>54911_zma-miR156a:pmrd
Length = 152
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacaca 40
>54768_vvi-miR156c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>54767_vvi-miR156b:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>54401_sbi-miR156i:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacaca 25
>54395_sbi-miR156c:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>54394_sbi-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacaca 25
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 90 cagaagagagtgagcacaca 71
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 11 cagaagagagtgagcacaca 30
>51596_ptc-miR156f:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51595_ptc-miR156e:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51594_ptc-miR156d:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51593_ptc-miR156c:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51592_ptc-miR156b:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51591_ptc-miR156a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>51354_ppr-miR156:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacaca 24
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 86 cagaagagagtgagcacaca 67
>48807_osa-miR156g:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 7 cagaagagagtgagcacaca 26
>48806_osa-miR156f:pmrd
Length = 186
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 7 cagaagagagtgagcacaca 26
>48803_osa-miR156c:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 32 cagaagagagtgagcacaca 51
>48802_osa-miR156b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 46 cagaagagagtgagcacaca 65
>48795_oru-miR156:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacaca 24
>48652_hvv-miR156a:pmrd
Length = 394
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacaca 23
>48490_ghr-miR156c:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacaca 25
>48489_ghr-miR156b:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacaca 25
>48488_ghr-miR156a:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 12 cagaagagagtgagcacaca 31
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 93 cagaagagagtgagcacaca 74
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacaca 25
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacaca 25
>46916_ath-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacaca 33
>46915_ath-miR156f:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacaca 43
>46914_ath-miR156e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacaca 20
||||||||||||||||||||
Sbjct: 10 cagaagagagtgagcacaca 29
>54923_zma-miR156n:pmrd
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacac 22
>54919_zma-miR156i:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 16 cagaagagagtgagcacac 34
>54917_zma-miR156g:pmrd
Length = 121
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 53 ttgcgtgctcactgctctttctg 75
||||||||||||| |||||||||
Sbjct: 93 ttgcgtgctcacttctctttctg 115
>54916_zma-miR156f:pmrd
Length = 167
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 53 ttgcgtgctcactgctctttctg 75
||||||||||||| |||||||||
Sbjct: 125 ttgcgtgctcacttctctttctg 147
>54915_zma-miR156e:pmrd
Length = 126
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 23 cagaagagagtgagcacac 41
>54914_zma-miR156d:pmrd
Length = 119
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 19 cagaagagagtgagcacac 37
>54656_stu-miR156a:pmrd
Length = 86
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacac 22
>54569_smo-miR156a:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32
>54402_sbi-miR157:pmrd
Length = 86
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacac 23
>54399_sbi-miR156g:pmrd
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacac 23
>54398_sbi-miR156f:pmrd
Length = 128
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 53 ttgcgtgctcactgctctttctg 75
||||||||||||| |||||||||
Sbjct: 99 ttgcgtgctcacttctctttctg 121
>54393_sbi-miR156a:pmrd
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacac 22
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 10 cagaagagagtgagcacac 28
>48813_osa-miR156m:pmrd
Length = 86
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 4 cagaagagagtgagcacac 22
>48810_osa-miR156j:pmrd
Length = 165
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 45 cagaagagagtgagcacac 63
>48809_osa-miR156i:pmrd
Length = 90
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 6 cagaagagagtgagcacac 24
>48808_osa-miR156h:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 12 cagaagagagtgagcacac 30
>48804_osa-miR156d:pmrd
Length = 129
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 23 cagaagagagtgagcacac 41
>48801_osa-miR156a:pmrd
Length = 100
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 10 cagaagagagtgagcacac 28
>48491_ghr-miR156d:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 12 cagaagagagtgagcacac 30
>48425_cpt-miR156a:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacac 19
|||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32
