miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54669_stu-miR403:pmrd
Length = 106
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtttgtgcgtgaatctaacaacccttttcatcagaaaaactgttgttgtttgctagattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 gtttgtgcgtgaatctaacaacccttttcatcagaaaaactgttgttgtttgctagattc 78
Query: 61 acgcacaaactcg 73
|||||||||||||
Sbjct: 79 acgcacaaactcg 91
>54562_sly-miR403:pmrd
Length = 130
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 gtttgtgcgtgaatctaacaacccttttcatcagaaaaactgttgttgtttgctagattc 60
|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct: 35 gtttgtgcgtgaatctaacaactcttttcatctgaaaaactgttattgtttgctagattc 94
Query: 61 acgcacaaactcg 73
|||||||| ||||
Sbjct: 95 acgcacaagctcg 107
>54889_vvi-miR403d:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gtttgtgcgtgaatctaacaacccttt 27
|||||||||||||||||||| ||||||
Sbjct: 73 gtttgtgcgtgaatctaacaccccttt 47
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 57 tagattcacgcacaaactcg 76
>54887_vvi-miR403b:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gtttgtgcgtgaatctaacaacccttt 27
|||||||||||||||||||| ||||||
Sbjct: 73 gtttgtgcgtgaatctaacaccccttt 47
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 57 tagattcacgcacaaactcg 76
>48424_cpa-miR403:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tgctagattcacgcacaaactcg 73
|||||||||||||||||||||||
Sbjct: 88 tgctagattcacgcacaaactcg 110
>54891_vvi-miR403f:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 79 tagattcacgcacaaactcg 98
>54890_vvi-miR403e:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 86 tagattcacgcacaaactcg 105
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gtttgtgcgtgaatctaac 19
|||||||||||||||||||
Sbjct: 102 gtttgtgcgtgaatctaac 84
>54888_vvi-miR403c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 86 tagattcacgcacaaactcg 105
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gtttgtgcgtgaatctaac 19
|||||||||||||||||||
Sbjct: 102 gtttgtgcgtgaatctaac 84
>54886_vvi-miR403a:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 86 tagattcacgcacaaactcg 105
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gtttgtgcgtgaatctaac 19
|||||||||||||||||||
Sbjct: 102 gtttgtgcgtgaatctaac 84
>51761_ptc-miR403c:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 60 tagattcacgcacaaactcg 79
>51760_ptc-miR403b:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 72 tagattcacgcacaaactcg 91
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gtttgtgcgtgaatctaac 19
|||||||||||||||||||
Sbjct: 88 gtttgtgcgtgaatctaac 70
>51759_ptc-miR403a:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 104 tagattcacgcacaaactcg 123
>51353_ppl-miR403:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 104 tagattcacgcacaaactcg 123
>48413_bst-miR403:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 91 tagattcacgcacaaactcg 110
>47024_ath-miR403:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tagattcacgcacaaactcg 73
||||||||||||||||||||
Sbjct: 104 tagattcacgcacaaactcg 123
