miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 34
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 33 accgatcgataaacctctgcatcca 9
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 34
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 33 accgatcgataaacctctgcatcca 9
>51616_ptc-miR162a:pmrd
Length = 107
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 72
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 73 accgatcgataaacctctgcatcca 97
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 92 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 33
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 32 accgatcgataaacctctgcatcca 8
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 94 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 35
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 34 accgatcgataaacctctgcatcca 10
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 94 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 35
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 34 accgatcgataaacctctgcatcca 10
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 92 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 33
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 32 accgatcgataaacctctgcatcca 8
>51618_ptc-miR162c:pmrd
Length = 107
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 13 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 72
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 73 accgatcgataaacctctgcatcca 97
>51617_ptc-miR162b:pmrd
Length = 107
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 62
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 13 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 72
Query: 63 accgatcgataaacctctgcatcca 87
|||||||||||||||||||||||||
Sbjct: 73 accgatcgataaacctctgcatcca 97
>54387_rco-miR162:pmrd
Length = 96
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctgg 32
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 catgaaccgatcgataaacctctgcatcca 87
|||||| |||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatcca 94
>48423_cpa-miR162a:pmrd
Length = 109
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctgg 32
||||||||||||||||||||||||||||||
Sbjct: 15 ggaggcagcggttcatcgatctcttcctgg 44
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 56 aacatgaaccgatcgataaacctctgcatcca 87
|||||||| |||||||||||||||||||||||
Sbjct: 68 aacatgaatcgatcgataaacctctgcatcca 99
>48493_ghr-miR162a:pmrd
Length = 148
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||
Sbjct: 26 ggaggcagcggttcatcgatctcttcctg 54
>46937_ath-miR162a:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||
Sbjct: 27 ggaggcagcggttcatcgatctcttcctg 55
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aaaaacatgaaccgatcgataaacctctgcatcca 87
|||| |||||| ||||||||||||||||||||||
Sbjct: 74 aaaagcatgaatagatcgataaacctctgcatcca 108
>48545_gma-miR162a:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 4e-09
Identities = 68/81 (83%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 7 gcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatgaaccg 66
||||||||||||||||||||||||| | | ||||||| || | || |||||| ||
Sbjct: 16 gcagcggttcatcgatctcttcctg----aatcgttgtttaacatcagaaccatgaatcg 71
Query: 67 atcgataaacctctgcatcca 87
|||||||||||||||||||||
Sbjct: 72 atcgataaacctctgcatcca 92
>48682_llu-miR162:pmrd
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 catgaaccgatcgataaacctctgcatcca 87
|||||| |||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatcca 79
>54784_vvi-miR162:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||
Sbjct: 15 gcagcggttcatcgatctcttcctg 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tcgataaacctctgcatcca 87
||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatcca 92
>48707_mtr-miR162d:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 aaacatgaaccgatcgataaacctctgcatcca 87
||||||||| || ||||||||||||||||||||
Sbjct: 54 aaacatgaatcggtcgataaacctctgcatcca 86
>48706_mtr-miR162c:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 55 aaacatgaaccgatcgataaacctctgcatcca 87
||||||||| || ||||||||||||||||||||
Sbjct: 33 aaacatgaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 aaacatgaaccgatcgataaacctctgcatcca 87
||||||||| || ||||||||||||||||||||
Sbjct: 53 aaacatgaatcggtcgataaacctctgcatcca 85
>48834_osa-miR162a:pmrd
Length = 171
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatcca 162
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 38 cgatcgataaacctctgcatcca 16
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3 ggaggcagcggttcatcgatc 23
|||||||||||||||||||||
Sbjct: 100 ggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||||||||||||||||
Sbjct: 76 cgatcgataaacctctgcatcca 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 ggaggcagcggttcatcgatc 23
|||||||||||||||||||||
Sbjct: 14 ggaggcagcggttcatcgatc 34
>54948_zma-miR162b:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tcgataaacctctgcatcca 87
||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatcca 129
>54542_sly-miR162:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tcgataaacctctgcatcca 87
||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatcca 98
>48685_lsa-miR162:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tcgataaacctctgcatcca 87
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
>48546_gma-miR162m:pmrd
Length = 367
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tcgataaacctctgcatcca 87
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
>48836_osa-miR162m:pmrd
Length = 114
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||| ||||||||||||
Sbjct: 91 cgatcgataagcctctgcatcca 113
>48835_osa-miR162b:pmrd
Length = 134
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 65 cgatcgataaacctctgcatcca 87
|||||||||| ||||||||||||
Sbjct: 101 cgatcgataagcctctgcatcca 123