miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52769_ptc-miRf10947-akr:pmrd
Length = 124
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 63
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 121
>51872_ptc-miRf10050-akr:pmrd
Length = 138
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 70
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 128
>51871_ptc-miRf10049-akr:pmrd
Length = 138
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 70
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 128
>51870_ptc-miRf10048-akr:pmrd
Length = 124
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 63
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 121
>51770_ptc-miR475a:pmrd
Length = 124
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 63
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 121
>53811_ptc-miRf11989-akr:pmrd
Length = 128
Score = 149 bits (75), Expect = 5e-37
Identities = 108/118 (91%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctga 66
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||| || || || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 67 aatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 122
>52353_ptc-miRf10531-akr:pmrd
Length = 128
Score = 149 bits (75), Expect = 5e-37
Identities = 108/118 (91%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctga 66
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||| || || || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 67 aatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 122
>51771_ptc-miR475b:pmrd
Length = 120
Score = 149 bits (75), Expect = 5e-37
Identities = 108/118 (91%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctga 62
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||| || || || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 63 aatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 118
>53810_ptc-miRf11988-akr:pmrd
Length = 102
Score = 83.8 bits (42), Expect = 3e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 3 tgatcaatggccattgtaagagtagaaggatccatgaagcaa 44
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tgatcaatggccattgtaagagtagaaggatccatgaagcaa 50
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 71 aaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||||||||||||| |||| ||||||||||| | ||||||||||||
Sbjct: 49 aaaacattgactcctgatattccactcttacagagtccattgattaag 96
>51773_ptc-miR475d:pmrd
Length = 103
Score = 83.8 bits (42), Expect = 3e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 3 tgatcaatggccattgtaagagtagaaggatccatgaagcaa 44
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgatcaatggccattgtaagagtagaaggatccatgaagcaa 51
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 71 aaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||||||||||||||| |||| ||||||||||| | ||||||||||||
Sbjct: 50 aaaacattgactcctgatattccactcttacagagtccattgattaag 97
>51772_ptc-miR475c:pmrd
Length = 125
Score = 71.9 bits (36), Expect = 1e-13
Identities = 99/118 (83%), Gaps = 4/118 (3%)
Strand = Plus / Plus
Query: 1 cttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgctaa 60
||||| |||||||||||||||||||| | | ||||||| |||||||||||||||| |
Sbjct: 7 cttgaacaatggccattgtaagagta-agtggtccatgagtcaataactctctttgcaga 65
Query: 61 aatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 118
|||| ||| ||| |||||||||| |||||||| |||||| || ||||||||||||
Sbjct: 66 aatgcatgacaaagcattgactcc---tatttcacccttacaatgtccattgattaag 120
