miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48687_ltu-miR319:pmrd
Length = 167
Score = 323 bits (163), Expect = 2e-89
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 gagctctcttcagtccagtccaagatagtattaagccaatctccgctgctgactcgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagctctcttcagtccagtccaagatagtattaagccaatctccgctgctgactcgttgg 62
Query: 61 ctcatgaactcatccaacggctaggattccgatgtgtttttgatccaacgatgcgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctcatgaactcatccaacggctaggattccgatgtgtttttgatccaacgatgcgggagc 122
Query: 121 cgtgtttggttctgtctgtctcgtcttggactgaagggagctc 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cgtgtttggttctgtctgtctcgtcttggactgaagggagctc 165
>54843_vvi-miR319b:pmrd
Length = 194
Score = 69.9 bits (35), Expect = 6e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 97 tttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttggactgaag 156
|||||||||||||||||| ||||| | ||| ||| || ||||| |||||||||||||||
Sbjct: 114 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 173
Query: 157 ggagctc 163
|||||||
Sbjct: 174 ggagctc 180
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctc 165
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctc 163
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctc 163
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctc 163
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 153 tcttggactgaagggagctc 172
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 139 tcttggactgaagggagctc 158
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctc 163
||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctc 166
