miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51346_ppe-miR171:pmrd
          Length = 97

 Score =  153 bits (77), Expect = 2e-38
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 69

                           
Query: 61 ttgagccgtgccaatat 77
          |||||||||||||||||
Sbjct: 70 ttgagccgtgccaatat 86




>51345_ppe-miR170:pmrd
          Length = 97

 Score =  153 bits (77), Expect = 2e-38
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 69

                           
Query: 61 ttgagccgtgccaatat 77
          |||||||||||||||||
Sbjct: 70 ttgagccgtgccaatat 86




>54836_vvi-miR171i:pmrd
          Length = 103

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 67/77 (87%), Gaps = 2/77 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 60
          |||||||  ||||||||||||||||||  || |||  |||  |||||||||||||| |||
Sbjct: 14 atgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctga 71

                           
Query: 61 ttgagccgtgccaatat 77
          |||||||||||||||||
Sbjct: 72 ttgagccgtgccaatat 88




>46877_aqc-miR171b:pmrd
          Length = 77

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 42 attgggtcctttaatttgattgagccgtgccaatat 77
          ||||||||||||||| ||||||||||||||||||||
Sbjct: 39 attgggtcctttaatctgattgagccgtgccaatat 74




>54828_vvi-miR171a:pmrd
          Length = 99

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 47 gtcctttaatttgattgagccgtgccaatat 77
          |||||||||| ||||||||||||||||||||
Sbjct: 57 gtcctttaatctgattgagccgtgccaatat 87




>51691_ptc-miR171h:pmrd
          Length = 100

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
          ||||||| |||||| ||||||||||||||||||||
Sbjct: 56 ttgggtcgtttaatctgattgagccgtgccaatat 90




>51690_ptc-miR171g:pmrd
          Length = 100

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
          ||||||| |||||| ||||||||||||||||||||
Sbjct: 56 ttgggtcttttaatctgattgagccgtgccaatat 90




>52725_ptc-miRf10903-akr:pmrd
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
          |||||| |||| || ||||||||||||||||||||
Sbjct: 45 ttgggttctttcatctgattgagccgtgccaatat 79




>51692_ptc-miR171i:pmrd
          Length = 129

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 55  atttgattgagccgtgccaatat 77
           |||||||||||||||||||||||
Sbjct: 97  atttgattgagccgtgccaatat 119




>51688_ptc-miR171e:pmrd
          Length = 94

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
          |||||| |||| || ||||||||||||||||||||
Sbjct: 50 ttgggttctttcatctgattgagccgtgccaatat 84




>46979_ath-miR171c:pmrd
          Length = 116

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 55  atttgattgagccgtgccaatat 77
           |||||||||||||||||||||||
Sbjct: 84  atttgattgagccgtgccaatat 106




>55029_zma-miR171b:pmrd
          Length = 85

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatat 81




>54831_vvi-miR171d:pmrd
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatat 86




>54830_vvi-miR171c:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatat 89




>54551_sly-miR171a:pmrd
          Length = 122

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  tttgattgagccgtgccaatat 77
           ||||||||||||||||||||||
Sbjct: 85  tttgattgagccgtgccaatat 106




>54462_sbi-miR171k:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatat 81




>54452_sbi-miR171a:pmrd
          Length = 161

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  tttgattgagccgtgccaatat 77
           ||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatat 141




>51882_ptc-miRf10060-akr:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatat 82




>51685_ptc-miR171b:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatat 90




>51684_ptc-miR171a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatat 91




>48897_osa-miR171c:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatat 88




>48896_osa-miR171b:pmrd
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatat 89




>48723_mtr-miR171g:pmrd
          Length = 105

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99




>48722_mtr-miR171d:pmrd
          Length = 105

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99




>48403_bra-miR171a:pmrd
          Length = 85

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatat 81




>48386_bol-miR171a:pmrd
          Length = 96

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatat 87




>48367_bna-miR171e:pmrd
          Length = 92

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatat 86




>48366_bna-miR171d:pmrd
          Length = 96

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatat 87




>48312_bdi-miR171c:pmrd
          Length = 86

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatat 83




>46880_aqc-miR171e:pmrd
          Length = 102

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatat 2




>46879_aqc-miR171d:pmrd
          Length = 106

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 56  tttgattgagccgtgccaatat 77
           ||||||||||||||||||||||
Sbjct: 82  tttgattgagccgtgccaatat 103




>46876_aqc-miR171a:pmrd
          Length = 102

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 tttgattgagccgtgccaatat 77
          ||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99




>55039_zma-miR171m:pmrd
          Length = 113

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 57  ttgattgagccgtgccaatat 77
           |||||||||||||||||||||
Sbjct: 92  ttgattgagccgtgccaatat 112




>55036_zma-miR171i:pmrd
          Length = 104

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 57 ttgattgagccgtgccaatat 77
          |||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatat 84




>55033_zma-miR171f:pmrd
          Length = 155

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 57  ttgattgagccgtgccaatat 77
           |||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatat 134




>55024_zma-miR170m:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 57  ttgattgagccgtgccaatat 77
           |||||||||||||||||||||
Sbjct: 94  ttgattgagccgtgccaatat 114




>55037_zma-miR171j:pmrd
          Length = 129

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 90  tgattgagccgtgccaatat 109




>55032_zma-miR171e:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 87  tgattgagccgtgccaatat 106




>55031_zma-miR171d:pmrd
          Length = 121

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 82  tgattgagccgtgccaatat 101




>54680_tae-miR170b:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 tgattgagccgtgccaatat 77
          ||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatat 93




>54460_sbi-miR171i:pmrd
          Length = 90

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 tgattgagccgtgccaatat 77
          ||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatat 87




>54455_sbi-miR171d:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatat 134




>54453_sbi-miR171b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 93  tgattgagccgtgccaatat 112




>51689_ptc-miR171f:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatat 120




>49676_osa-miRf10461-akr:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 95  tgattgagccgtgccaatat 114




>48905_osa-miR171n:pmrd
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 tgattgagccgtgccaatat 77
          ||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatat 98




>48904_osa-miR171m:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 87  tgattgagccgtgccaatat 106




>48900_osa-miR171f:pmrd
          Length = 127

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 97  tgattgagccgtgccaatat 116




>48899_osa-miR171e:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 89  tgattgagccgtgccaatat 108




>48898_osa-miR171d:pmrd
          Length = 135

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatat 124




>48894_osa-miR170b:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tgattgagccgtgccaatat 77
           ||||||||||||||||||||
Sbjct: 87  tgattgagccgtgccaatat 106




>48893_osa-miR170a:pmrd
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 tgattgagccgtgccaatat 77
          ||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatat 98




>48663_hvv-miR171:pmrd
          Length = 78

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 tgattgagccgtgccaatat 77
          ||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatat 77




>48662_hvv-miR170:pmrd
          Length = 78

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 tgattgagccgtgccaatat 77
          ||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatat 77