miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48399_bra-miR167a:pmrd
Length = 134
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 79
Query: 61 agggataagtgtcgattagatcatgttcgtagttt 95
|||||||||||||||||||||||||||||||||||
Sbjct: 80 agggataagtgtcgattagatcatgttcgtagttt 114
>48348_bna-miR167c:pmrd
Length = 134
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 79
Query: 61 agggataagtgtcgattagatcatgttcgtagttt 95
|||||||||||||||||||||||||||||||||||
Sbjct: 80 agggataagtgtcgattagatcatgttcgtagttt 114
>48401_bra-miR167c:pmrd
Length = 132
Score = 103 bits (52), Expect = 2e-23
Identities = 85/95 (89%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 60
||||||||||||||||||| |||||||| |||||| |||| || | |||||||||||||
Sbjct: 20 aagctgccagcatgatctaattaactttctttctctgttgatttt--atgacaatggaaa 77
Query: 61 agggataagtgtcgattagatcatgttcgtagttt 95
|| ||| |||||||||||||||||||||| |||||
Sbjct: 78 agagatgagtgtcgattagatcatgttcgcagttt 112
>48400_bra-miR167b:pmrd
Length = 132
Score = 103 bits (52), Expect = 2e-23
Identities = 85/95 (89%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 60
||||||||||||||||||| |||||||| |||||| |||| || | |||||||||||||
Sbjct: 20 aagctgccagcatgatctaattaactttctttctctgttgatttt--atgacaatggaaa 77
Query: 61 agggataagtgtcgattagatcatgttcgtagttt 95
|| ||| |||||||||||||||||||||| |||||
Sbjct: 78 agagatgagtgtcgattagatcatgttcgcagttt 112
>48346_bna-miR167a:pmrd
Length = 132
Score = 103 bits (52), Expect = 2e-23
Identities = 85/95 (89%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttgtttatccatgacaatggaaa 60
||||||||||||||||||| |||||||| |||||| |||| || | |||||||||||||
Sbjct: 20 aagctgccagcatgatctaattaactttctttctctgttgatttt--atgacaatggaaa 77
Query: 61 agggataagtgtcgattagatcatgttcgtagttt 95
|| ||| |||||||||||||||||||||| |||||
Sbjct: 78 agagatgagtgtcgattagatcatgttcgcagttt 112
>46952_ath-miR167a:pmrd
Length = 138
Score = 52.0 bits (26), Expect = 7e-08
Identities = 80/97 (82%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttgt--ttatccatgacaatgga 58
||||||||||||||||||| ||| |||| ||| ||| |||| | | |||||| ||||
Sbjct: 21 aagctgccagcatgatctaattagctttctttatcctttgttgtgtttcatgacgatggt 80
Query: 59 aaagggataagtgtcgattagatcatgttcgtagttt 95
||| ||| ||| |||||||||||||||||| |||||
Sbjct: 81 taagagatcagtctcgattagatcatgttcgcagttt 117
>48402_bra-miR167d:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttg 40
||||||||||||||||||| ||| |||| |||||| ||||
Sbjct: 20 aagctgccagcatgatctaattatctttctttctctgttg 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 49 tgacaatggaaaagggataagtgtcgattagatcatgttcgtagttt 95
|||| ||||||||| || ||||| |||||||||||||||| |||||
Sbjct: 58 tgacgatggaaaagacatgagtgttgattagatcatgttcgcagttt 104
>48347_bna-miR167b:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctagttaactttatttctccgttg 40
||||||||||||||||||| ||| |||| |||||| ||||
Sbjct: 20 aagctgccagcatgatctaattatctttctttctctgttg 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 49 tgacaatggaaaagggataagtgtcgattagatcatgttcgtagttt 95
|||| ||||||||| || ||||| |||||||||||||||| |||||
Sbjct: 58 tgacgatggaaaagacatgagtgttgattagatcatgttcgcagttt 104
>54996_zma-miR167s:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 6 aagctgccagcatgatctag 25
>54994_zma-miR167q:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 6 aagctgccagcatgatctag 25
>54993_zma-miR167p:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 6 aagctgccagcatgatctag 25
>54992_zma-miR167o:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 6 aagctgccagcatgatctag 25
>54991_zma-miR167n:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 199 aagctgccagcatgatctag 218
>54981_zma-miR167d:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 19 aagctgccagcatgatctag 38
>54980_zma-miR167c:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 19 aagctgccagcatgatctag 38
>54978_zma-miR167a:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 19 aagctgccagcatgatctag 38
>54800_vvi-miR167d:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 13 aagctgccagcatgatctag 32
>54678_tae-miR167:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 20 aagctgccagcatgatctag 39
>54435_sbi-miR167i:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 5 aagctgccagcatgatctag 24
>54427_sbi-miR167a:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 3 aagctgccagcatgatctag 22
>48861_osa-miR167c:pmrd
Length = 163
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 19 aagctgccagcatgatctag 38
>48859_osa-miR167a:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctag 35
>48858_osa-miR167a:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctag 35
>48715_mtr-miR167:pmrd
Length = 320
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 8 aagctgccagcatgatctag 27
>48557_gma-miR167d:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 23 aagctgccagcatgatctag 42
>48555_gma-miR167b:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctag 20
||||||||||||||||||||
Sbjct: 23 aagctgccagcatgatctag 42
