miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50172_osa-miRf10957-akr:pmrd
Length = 104
Score = 83.8 bits (42), Expect = 2e-17
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 39 gatgaccatcatctgtgacgggcaccaactctaggcccgattgagataac 88
||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 1 gatgaccatcatctgtgacaggcaccaactttaggcccgattgagataac 50
Score = 65.9 bits (33), Expect = 4e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 3 atatctcaaacaggcctaaagttgcggcccgtcacagatgaccatcatc 51
||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 56 atatctcaaacaggcctcaatttggtgcccgtcacagatgaccatcatc 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 4 tatctcaaacaggcctaaagttgcggcccgtcacagatga 43
|||||||| | |||||||||||| ||| |||||||||||
Sbjct: 48 tatctcaatcgggcctaaagttggtgcctgtcacagatga 9
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 47 tcatctgtgacgggcaccaa 66
||||||||||||||||||||
Sbjct: 96 tcatctgtgacgggcaccaa 77
>49882_osa-miRf10667-akr:pmrd
Length = 104
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 ccatatctcaaacaggcctaaagttgcggcccgtcacagatgaccatcatc 51
||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct: 54 ccatatctcaaacgggccttaagttggggcccgtcacagatgaccatcatc 104
Score = 67.9 bits (34), Expect = 1e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 39 gatgaccatcatctgtgacgggcaccaactctaggcccgattgagataac 88
||||||||||||| |||||||||||||||| ||| ||| |||||||||||
Sbjct: 1 gatgaccatcatccgtgacgggcaccaactttagacccaattgagataac 50
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagata 86
||||||||||||||| |||||| ||||||| ||||||||
Sbjct: 96 tcatctgtgacgggccccaacttaaggcccgtttgagata 57
>49866_osa-miRf10651-akr:pmrd
Length = 247
Score = 77.8 bits (39), Expect = 1e-15
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 38 agatgaccatcatctgtgacgggcaccaactctaggcccgatt 80
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 agatgaccatcatctgtgacgggcaccaactttaggcccgatt 205
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 21 aagttgcggcccgtcacagatgaccatcatc 51
|||||| ||||| ||||||||||||||||||
Sbjct: 32 aagttggggcccatcacagatgaccatcatc 2
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 21 aagttgcggcccgtcacagatgaccatcat 50
|||||| ||||| |||||||||||||||||
Sbjct: 161 aagttggggcccatcacagatgaccatcat 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 15 ggcctaaagttgcggcccgtcacagatga 43
|||||||||||| |||||||||||||||
Sbjct: 210 ggcctaaagttggtgcccgtcacagatga 238
>50759_osa-miRf11544-akr:pmrd
Length = 101
Score = 71.9 bits (36), Expect = 7e-14
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ccatatctcaaacaggcctaaagttgcggcccgtcacagatgaccatc 48
|||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 48 ccatatctcaaatgggcctaaagttgtggcccgtcacagatgaccatc 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagata 86
||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 6 tcatctgtgacgggccacaactttaggcccatttgagata 45
>50948_osa-miRf11733-akr:pmrd
Length = 112
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 29 gcccgtcacagatgaccatcatctgtgacgggcaccaactctaggcccgattgagataa 87
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 104 gcccgtcacagatgagggtcatctgtgacgggctccaactagaggcccgattgagataa 46
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 tatctcaaacaggcctaaagttgcggcccgtcacagatgaccatcatctgtgacgggc 61
|||||||| | ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 47 tatctcaatcgggcctctagttggagcccgtcacagatgaccctcatctgtgacgggc 104
>50892_osa-miRf11677-akr:pmrd
Length = 98
Score = 69.9 bits (35), Expect = 3e-13
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 42 gaccatcatctgtgacgggcaccaactctaggcccgattgagataac 88
|||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct: 98 gaccatcatccgtgacgggcaccaactttaggcccgactgagataac 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 ccatatctcaaacaggcctaaagttgcggcccgtcacagatgac 44
||||||||||||| || || ||||| |||| ||||||||||||
Sbjct: 48 ccatatctcaaacgggtcttgagttggggcctgtcacagatgac 5
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagata 86
||||||||||| ||| ||||||| || |||| ||||||||
Sbjct: 6 tcatctgtgacaggccccaactcaagacccgtttgagata 45
>50356_osa-miRf11141-akr:pmrd
Length = 115
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 29 gcccgtcacagatgaccatcatctgtgacgggcaccaactctaggcccgattgagataa 87
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct: 107 gcccgtcacagatgagggtcatctgtgacgggctccaactagaggcccgattgagataa 49
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 tatctcaaacaggcctaaagttgcggcccgtcacagatgaccatcatctgtgacgggc 61
|||||||| | ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 50 tatctcaatcgggcctctagttggagcccgtcacagatgaccctcatctgtgacgggc 107
>49066_osa-miR817:pmrd
Length = 83
Score = 69.9 bits (35), Expect = 3e-13
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 4 tatctcaaacaggcctaaagttgcggcccgtcacagatgaccatcatctgtgacgggcac 63
|||||||| | ||||| |||||| ||||||||| ||||||||||||| |||||| |||
Sbjct: 83 tatctcaatcgggcctcaagttggagcccgtcacggatgaccatcatccatgacggacac 24
Query: 64 caactctaggcccgattgagata 86
||||| ||||| ||||||||||
Sbjct: 23 caacttgaggcctgattgagata 1
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 4 tatctcaaacaggcctaaagttgcggcccgtcacagatgaccatcatctgtgacgggcac 63
|||||||| ||||||| |||||| | |||||| ||||| ||||| ||||||||| |
Sbjct: 1 tatctcaatcaggcctcaagttggtgtccgtcatggatgatggtcatccgtgacgggctc 60
Query: 64 caactctaggcccgattgagata 86
||||| ||||||||||||||||
Sbjct: 61 caacttgaggcccgattgagata 83
>51193_osa-miRf11978-akr:pmrd
Length = 90
Score = 61.9 bits (31), Expect = 7e-11
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 46 atcatctgtgacgggcaccaactctaggcccgattgagataac 88
||||||||||||||||||||||| || |||||||||||||||
Sbjct: 90 atcatctgtgacgggcaccaactttatacccgattgagataac 48
Score = 56.0 bits (28), Expect = 4e-09
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1 ccatatctcaaacaggcctaaagttgcggcccgtcacagatgac 44
||||||||||||| ||||| |||||| ||||| |||||||||||
Sbjct: 44 ccatatctcaaacgggccttaagttggggcccatcacagatgac 1
>50696_osa-miRf11481-akr:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagataa 87
||||||||||||||| |||||| |||||||||||||||||
Sbjct: 10 tcatctgtgacgggctccaactagaggcccgattgagataa 50
>50264_osa-miRf11049-akr:pmrd
Length = 136
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 29 gcccgtcacagatgaccatcatctgtgacgggca 62
||||||||||||||||| | ||||||||||||||
Sbjct: 15 gcccgtcacagatgacccttatctgtgacgggca 48
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/33 (93%), Gaps = 2/33 (6%)
Strand = Plus / Minus
Query: 29 gcccgtcacagatgaccatcatctgtgacgggc 61
|||||||||||||||| |||||||||||||||
Sbjct: 122 gcccgtcacagatgac--tcatctgtgacgggc 92
>49990_osa-miRf10775-akr:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagataa 87
||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 15 tcatccgtgacgggctccaactagaggcccgattgagataa 55
>49989_osa-miRf10774-akr:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagataa 87
||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 80 tcatccgtgacgggctccaactagaggcccgattgagataa 40
>49489_osa-miRf10274-akr:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 gcccgtcacagatgaccatcatct 52
||||||||||||||||||||||||
Sbjct: 35 gcccgtcacagatgaccatcatct 58
>50960_osa-miRf11745-akr:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 4e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagat 85
|||||||||||||||| |||| ||||||||||||||||
Sbjct: 120 tcatctgtgacgggcattaact-taggcccgattgagat 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 ggcccgtcacagatgaccatcatct 52
|||||||||||||||||| ||||||
Sbjct: 62 ggcccgtcacagatgaccctcatct 86
>50939_osa-miRf11724-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 29 gcccgtcacagatgaccatcatctgtgacgg 59
||||||||||||||||| | |||||||||||
Sbjct: 82 gcccgtcacagatgacccttatctgtgacgg 52
>50681_osa-miRf11466-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/38 (92%), Gaps = 2/38 (5%)
Strand = Plus / Plus
Query: 28 ggcccgtcacagatgaccatcatctgtgacgggcacca 65
||||||||||||||||| ||||| |||||||||||||
Sbjct: 4 ggcccgtcacagatgac--tcatcagtgacgggcacca 39
>50680_osa-miRf11465-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/38 (92%), Gaps = 2/38 (5%)
Strand = Plus / Minus
Query: 28 ggcccgtcacagatgaccatcatctgtgacgggcacca 65
||||||||||||||||| ||||| |||||||||||||
Sbjct: 105 ggcccgtcacagatgac--tcatcagtgacgggcacca 70
>50679_osa-miRf11464-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/38 (92%), Gaps = 2/38 (5%)
Strand = Plus / Minus
Query: 28 ggcccgtcacagatgaccatcatctgtgacgggcacca 65
||||||||||||||||| ||||| |||||||||||||
Sbjct: 106 ggcccgtcacagatgac--tcatcagtgacgggcacca 71
>50448_osa-miRf11233-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgagat 85
|||||||||||||||| |||| ||||||||||||||||
Sbjct: 91 tcatctgtgacgggcattaact-taggcccgattgagat 54
>51194_osa-miRf11979-akr:pmrd
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 29 gcccgtcacagatgaccatcatctgtgacgggca 62
|||| |||||||||||| | ||||||||||||||
Sbjct: 114 gcccatcacagatgacccttatctgtgacgggca 147
>50202_osa-miRf10987-akr:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 47 tcatctgtgacgggcaccaactctaggcccgattgaga 84
|||||||||||||||| |||| |||||||||||||||
Sbjct: 130 tcatctgtgacgggcattaact-taggcccgattgaga 94
>49923_osa-miRf10708-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 29 gcccgtcacagatgaccatcatctgtgacgggca 62
||||||||||||||||| | |||| |||||||||
Sbjct: 85 gcccgtcacagatgacccttatctatgacgggca 52
>50148_osa-miRf10933-akr:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcacagatgaccatcatctgtgacgggca 62
|||||||||||| | ||||||||||||||
Sbjct: 106 tcacagatgacccttatctgtgacgggca 78
>50863_osa-miRf11648-akr:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 32 cgtcacagatgaccatcatctgtgacgggca 62
||||||||||||| ||||||||||||||||
Sbjct: 34 cgtcacagatgac--tcatctgtgacgggca 6
>50596_osa-miRf11381-akr:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 28 ggcccgtcacagatgaccatcatctgtgacgg 59
||||| |||||||||||| ||||| |||||||
Sbjct: 74 ggcccatcacagatgaccctcatcagtgacgg 105
