miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48903_osa-miR171i:pmrd
Length = 120
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ggtattggcgtgcctcaatccgaaggcatggctgattacaggcacctcgaccgatctagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtattggcgtgcctcaatccgaaggcatggctgattacaggcacctcgaccgatctagc 68
Query: 61 gcatgcagccatgtttcttggattgagccgcgtcaatatc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gcatgcagccatgtttcttggattgagccgcgtcaatatc 108
>54459_sbi-miR171h:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 ggtattggcgtgcctcaatccgaaggcatggctgatt 37
|||||||||| |||||||||||||||| |||||||||
Sbjct: 1 ggtattggcgcgcctcaatccgaaggcgtggctgatt 37
Score = 56.0 bits (28), Expect = 5e-09
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 65 gcagccatgtttcttggattgagccgcgtcaatatc 100
||||||||||| ||||||||||||||||||||||||
Sbjct: 45 gcagccatgtt-cttggattgagccgcgtcaatatc 79
>54829_vvi-miR171b:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 gattgagccgcgtcaatatc 100
||||||||||||||||||||
Sbjct: 70 gattgagccgcgtcaatatc 89
