miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48828_osa-miR160c:pmrd
Length = 99
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 67
Query: 61 atggatggcgtgcacggagccaagc 85
|||||||||||||||||||||||||
Sbjct: 68 atggatggcgtgcacggagccaagc 92
>54759_ttu-miR160a:pmrd
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttctgcga-gaggttgcctat 59
|||||||||||||||||||||||||| |||||||| | ||| ||| | |||||||||
Sbjct: 2 gcctggctccctgtatgccactcatccagagcaac-accttttgcaataaggttgcctgc 60
Query: 60 gatggatggcgtgcacggagccaagc 85
||||||||||||||||||| ||||||
Sbjct: 61 gatggatggcgtgcacggatccaagc 86
>54406_sbi-miR160c:pmrd
Length = 83
Score = 71.9 bits (36), Expect = 7e-14
Identities = 73/85 (85%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaacaaacttctgcgagaggttgcctatg 60
|||||||||||||||||||||||||||||| |||||| || | |||||||||||
Sbjct: 2 gcctggctccctgtatgccactcatctagatcaacaa----ctacctatggttgcctatg 57
Query: 61 atggatggcgtgcacggagccaagc 85
|||| |||||||||||| |||||||
Sbjct: 58 atggttggcgtgcacggtgccaagc 82
>54940_zma-miR160c:pmrd
Length = 100
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaac 35
|||||||||||||||||||||||||||||||||||
Sbjct: 8 gcctggctccctgtatgccactcatctagagcaac 42
>48832_osa-miR160m:pmrd
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcat 25
|||||||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccactcat 26
>48827_osa-miR160b:pmrd
Length = 139
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcat 25
|||||||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccactcat 55
>54946_zma-miR160i:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 3 gcctggctccctgtatgccactc 25
>54942_zma-miR160e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 10 gcctggctccctgtatgccactc 32
>54941_zma-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgccactc 44
>54675_tae-miR160:pmrd
Length = 148
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 23 gcctggctccctgtatgccactc 45
>54408_sbi-miR160e:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccactc 24
>54407_sbi-miR160d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccactc 24
>48833_osa-miR160n:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccactc 24
>48829_osa-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactc 23
|||||||||||||||||||||||
Sbjct: 9 gcctggctccctgtatgccactc 31
>48826_osa-miR160a:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccactcatctagagcaac 35
||||||||||||||||||||| ||| |||| ||||
Sbjct: 5 gcctggctccctgtatgccacacatgtagaccaac 39
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccact 52
>48791_oba-miR160:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccact 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccact 26
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccac 22
>54939_zma-miR160b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgccac 42
>54938_zma-miR160a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 11 gcctggctccctgtatgccac 31
>54780_vvi-miR160c:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccac 32
>54575_smo-miR160b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 14 gcctggctccctgtatgccac 34
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccac 22
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 13 gcctggctccctgtatgccac 33
>51611_ptc-miR160d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccac 32
>51608_ptc-miR160a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccac 32
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>51364_ppt-miR160f:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccac 22
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgccac 26
>46936_ath-miR160c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccac 21
|||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgccac 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 21 gcctggctccctgtatgcca 40
>51610_ptc-miR160c:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51360_ppt-miR160b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgcca 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 325 gcctggctccctgtatgcca 344
>48542_gma-miR160a:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgcca 41
>48397_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 27 gcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 27 gcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
