miRNEST 2.0, an integrative microRNA resource :: BLAST
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgtg 32
||||||||||||||||||||||||||||||||
Sbjct: 26 tggaggcagcggttcatcgatctcttcctgtg 57
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 73 taaaagcacgaacagatcgataaacctctgcatcca 108
|||||||| ||| |||||||||||||||||||||||
Sbjct: 73 taaaagcatgaatagatcgataaacctctgcatcca 108
>54387_rco-miR162:pmrd
Length = 96
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 73 gatcgataaacctctgcatcca 94
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 94 tggaggcagcggttcatcgatctcttcctg 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 gaacagatcgataaacctctgcatcca 108
|||| ||||||||||||||||||||||
Sbjct: 35 gaaccgatcgataaacctctgcatcca 9
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 94 tggaggcagcggttcatcgatctcttcctg 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 gaacagatcgataaacctctgcatcca 108
|||| ||||||||||||||||||||||
Sbjct: 35 gaaccgatcgataaacctctgcatcca 9
>51616_ptc-miR162a:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 12 tggaggcagcggttcatcgatctcttcctg 41
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gaacagatcgataaacctctgcatcca 108
|||| ||||||||||||||||||||||
Sbjct: 71 gaaccgatcgataaacctctgcatcca 97
>48493_ghr-miR162a:pmrd
Length = 148
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 25 tggaggcagcggttcatcgatctcttcctg 54
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 92 gatcgataaacctctgcatcca 113
>48423_cpa-miR162a:pmrd
Length = 109
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 14 tggaggcagcggttcatcgatctcttcctg 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 78 gatcgataaacctctgcatcca 99
>54784_vvi-miR162:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 10 tggatgcagcggttcatcgatctcttcctg 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatcca 92
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 37 cacgaaccgatcgataaacctctgcatcca 8
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 93 tggaggcagcggttcatcgatcttttcctg 64
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 39 cacgaaccgatcgataaacctctgcatcca 10
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 95 tggaggcagcggttcatcgatcttttcctg 66
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 39 cacgaaccgatcgataaacctctgcatcca 10
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 95 tggaggcagcggttcatcgatcttttcctg 66
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 37 cacgaaccgatcgataaacctctgcatcca 8
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 93 tggaggcagcggttcatcgatcttttcctg 64
>51618_ptc-miR162c:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 12 tggaggcagcggttcatcgatcttttcctg 41
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 68 cacgaaccgatcgataaacctctgcatcca 97
>51617_ptc-miR162b:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 12 tggaggcagcggttcatcgatcttttcctg 41
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 68 cacgaaccgatcgataaacctctgcatcca 97
>48545_gma-miR162a:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 11 tggatgcagcggttcatcgatctcttcctg 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 71 gatcgataaacctctgcatcca 92
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctgtg 32
|||||||||||||||||||||| ||||||||
Sbjct: 101 tggaggcagcggttcatcgatcaattcctgtg 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 74 aaaagcacgaacagatcgataaacctctgcatcca 108
||||||| ||| ||||||||||||||||||||||
Sbjct: 50 aaaagcaagaatcgatcgataaacctctgcatcca 16
>46938_ath-miR162b:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgtg 32
|||||||||||||||||||||| ||||||||
Sbjct: 13 tggaggcagcggttcatcgatcaattcctgtg 44
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 74 aaaagcacgaacagatcgataaacctctgcatcca 108
||||||| ||| ||||||||||||||||||||||
Sbjct: 64 aaaagcaagaatcgatcgataaacctctgcatcca 98
>48834_osa-miR162a:pmrd
Length = 171
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 141 gatcgataaacctctgcatcca 162
>48707_mtr-miR162d:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcctg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatcca 86
>48706_mtr-miR162c:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 85 tggatgcagcggttcatcgatctgttcctg 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 20 tcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 66 tcgataaacctctgcatcca 85
>48682_llu-miR162:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| ||||||||| |||||||||||||||
Sbjct: 2 tggaagcagcggtttatcgatctcttcctg 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 58 gatcgataaacctctgcatcca 79
>54948_zma-miR162b:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatcca 129
>54542_sly-miR162:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatcca 98
>48685_lsa-miR162:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
>48546_gma-miR162m:pmrd
Length = 367
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatcca 108
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
