miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50649_osa-miRf11434-akr:pmrd
Length = 82
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 12 cctgtttggcacagctccagctccaactccacccctcctggagctggagctcagccaaac 71
Query: 68 agtttcagc 76
| |||||||
Sbjct: 72 aatttcagc 80
>49974_osa-miRf10759-akr:pmrd
Length = 83
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 12 cctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaac 71
Query: 68 agtttcagc 76
|||||||||
Sbjct: 72 agtttcagc 80
>50218_osa-miRf11003-akr:pmrd
Length = 84
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 13 cctgtttggcacagctctagctccagctccacccctcctggagctggagctcagccaaac 72
Query: 68 agtttcagc 76
|||||||||
Sbjct: 73 agtttcagc 81
>49247_osa-miRf10032-akr:pmrd
Length = 78
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||
Sbjct: 8 cctgtttggcacagctccagctccagctccacccctcctggagctggagctcagtcaaac 67
Query: 68 agtttcagc 76
|||||||||
Sbjct: 68 agtttcagc 76
>50483_osa-miRf11268-akr:pmrd
Length = 73
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 9 ctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaaca 68
|||||||||||||||||||||||| ||| | | || ||||||||||||||||||||||||
Sbjct: 7 ctgtttggcacagctccagctctagctccatctcttctggagctggagctcagccaaaca 66
Query: 69 gtttcag 75
|||||||
Sbjct: 67 gtttcag 73
>50725_osa-miRf11510-akr:pmrd
Length = 81
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 10 cctgtttggcacagctctagctctagctccacccctcttggagctggagctcagccaaac 69
Query: 68 ag 69
||
Sbjct: 70 ag 71
>50724_osa-miRf11509-akr:pmrd
Length = 83
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 11 cctgtttggcacagctctagctctagctccacccctcttggagctggagctcagccaaac 70
Query: 68 ag 69
||
Sbjct: 71 ag 72
>50723_osa-miRf11508-akr:pmrd
Length = 90
Score = 91.7 bits (46), Expect = 6e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 14 cctgtttggcacagctctagctctagctccacccctcttggagctggagctcagccaaac 73
Query: 68 ag 69
||
Sbjct: 74 ag 75
>49859_osa-miRf10644-akr:pmrd
Length = 107
Score = 89.7 bits (45), Expect = 3e-19
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 12 tttggcacagctccagctctaactctacccctcctggagctggagctcagccaaacagtt 71
||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||| ||
Sbjct: 107 tttggcacagctccagctccaactccacccctccttgagctggagctcagacaaacaatt 48
Query: 72 tcagc 76
|||||
Sbjct: 47 tcagc 43
>49544_osa-miRf10329-akr:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 17 cacagctccagctctaactctacccctcctggagctggagctcagccaaacagtttcagc 76
|||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 4 cacagctccaactctagctccacccctcctggagctggagctcagctaaacagtttcagc 63
>51155_osa-miRf11940-akr:pmrd
Length = 69
Score = 85.7 bits (43), Expect = 4e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 11 gtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaacagt 70
|||||||||||||||||||| ||||| ||| ||| ||||||| |||||||||||||||||
Sbjct: 63 gtttggcacagctccagctccaactccacctctcgtggagctagagctcagccaaacagt 4
Query: 71 ttc 73
|||
Sbjct: 3 ttc 1
>49426_osa-miRf10211-akr:pmrd
Length = 78
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 9 ctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaaca 68
|||||||||||||||||||||| | ||| ||| || |||||||||||| |||||||||||
Sbjct: 10 ctgtttggcacagctccagctccagctccacctcttctggagctggagttcagccaaaca 69
Query: 69 gtttca 74
||||||
Sbjct: 70 gtttca 75
>49710_osa-miRf10495-akr:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 17 cacagctccagctctaactctacccctcctggagctggagctcagccaaacagtttcagc 76
|||||||| ||||| | || ||||||| |||||||||||||||||||||||||||||||
Sbjct: 4 cacagctctagctccagcttcacccctcttggagctggagctcagccaaacagtttcagc 63
>50729_osa-miRf11514-akr:pmrd
Length = 77
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||||| || | || ||| ||||| |||||||||||||||||||
Sbjct: 69 cctgtttggcacagctccaacttcagttccacctctcctcaagctggagctcagccaaac 10
Query: 68 agtttcagc 76
|||||||||
Sbjct: 9 agtttcagc 1
>49705_osa-miRf10490-akr:pmrd
Length = 75
Score = 60.0 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 9 ctgtttggcacagctccagctctaactctacccctcctggagctggagct 58
|||||||||||||||||| |||||||| ||| || ||||||||||||||
Sbjct: 5 ctgtttggcacagctccaactctaacttcacctctgctggagctggagct 54
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 ctggagctggagctcagccaaacagtttc 73
|||||||||||||||||||||||||||||
Sbjct: 47 ctggagctggagctcagccaaacagtttc 75
>49383_osa-miRf10168-akr:pmrd
Length = 75
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 8 cctgtttggcacagctccagctctaactctacccctcctggagctggagctcagccaaac 67
||||||||||||||||| ||||||| || | | | |||||||||||||||||||||||
Sbjct: 7 cctgtttggcacagctctagctctacttccattctttctggagctggagctcagccaaac 66
Query: 68 ag 69
||
Sbjct: 67 ag 68
>50830_osa-miRf11615-akr:pmrd
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 20 agctccagctctaactctacccctcctggagctggagctcagccaaacag 69
|||||||| |||| ||| || | | ||||||||||||||||||| |||||
Sbjct: 50 agctccagttctagctccactctttctggagctggagctcagcccaacag 1
>50091_osa-miRf10876-akr:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 25 cagctctaactctacccctcctggagctggagctcagccaaacagtttca 74
|||||| ||||||||| ||| | ||||| |||| |||||||||||||||
Sbjct: 54 cagctccaactctacctctcttagagctagagcctagccaaacagtttca 5
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 9 ctgtttggcacagctccagctctaactct 37
|||||||||||||||||| ||||| ||||
Sbjct: 64 ctgtttggcacagctccaactctacctct 36
>50432_osa-miRf11217-akr:pmrd
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 gtttggcacagctccagctct 31
|||||||||||||||||||||
Sbjct: 63 gtttggcacagctccagctct 43
>49656_osa-miRf10441-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 gtttggcacagctccagctct 31
|||||||||||||||||||||
Sbjct: 70 gtttggcacagctccagctct 50
>51216_osa-miRf12001-akr:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 49 agctggagctcagccaaaca 68
||||||||||||||||||||
Sbjct: 28 agctggagctcagccaaaca 9
