miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54645_sof-miR396:pmrd
Length = 134
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatctctaagaggagcagctcgaagcctcgaactctacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatctctaagaggagcagctcgaagcctcgaactctacc 80
Query: 61 tgcatgagcaggtgcagttcaataaagctgtggga 95
|||||||||||||||||||||||||||||||||||
Sbjct: 81 tgcatgagcaggtgcagttcaataaagctgtggga 115
>54486_sbi-miR396b:pmrd
Length = 128
Score = 125 bits (63), Expect = 6e-30
Identities = 88/95 (92%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatctctaagaggagcagctcgaagcctcgaactctacc 60
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct: 21 ttccacagctttcttgaactgcatctctaagaggagcagcttgaa--ctc----tctacc 74
Query: 61 tgcatgagcaggtgcagttcaataaagctgtggga 95
|||||||||||||||||||||||||||||||||||
Sbjct: 75 tgcatgagcaggtgcagttcaataaagctgtggga 109
>55083_zma-miR396l:pmrd
Length = 97
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatctctaagaggagc 37
|||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ttccacagctttcttgaactgcatctctcagaggagc 37
>55073_zma-miR396b:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatctctaagaggagc 37
|||||||||||||||||||||||||||| ||||||||
Sbjct: 21 ttccacagctttcttgaactgcatctctcagaggagc 57
>48946_osa-miR396b:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatct 26
||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatct 36
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gtgcagttcaataaagctgtggga 95
||||||||||||||||||||||||
Sbjct: 83 gtgcagttcaataaagctgtggga 106
>55079_zma-miR396h:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcatc 28
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gcagttcaataaagctgtggga 95
||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtggga 113
>48578_gma-miR396a:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gcagttcaataaagctgtggga 95
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55074_zma-miR396c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcat 27
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gcagttcaataaagctgtggga 95
||||||||||||||||||||||
Sbjct: 80 gcagttcaataaagctgtggga 101
>55072_zma-miR396a:pmrd
Length = 137
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gcagttcaataaagctgtggga 95
||||||||||||||||||||||
Sbjct: 97 gcagttcaataaagctgtggga 118
>54871_vvi-miR396d:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
>54485_sbi-miR396a:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gcagttcaataaagctgtggga 95
||||||||||||||||||||||
Sbjct: 85 gcagttcaataaagctgtggga 106
>48680_lja-miR396:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaactgcat 39
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55082_zma-miR396k:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tgcagttcaataaagctgtggga 95
|||||||||||||||||||||||
Sbjct: 76 tgcagttcaataaagctgtggga 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaactgca 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 70 aggtgcagttcaataaagctgtgg 93
||||||||||||| ||||||||||
Sbjct: 34 aggtgcagttcaagaaagctgtgg 11
>51735_ptc-miR396b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 70 aggtgcagttcaataaagctgtgg 93
||||||||||||| ||||||||||
Sbjct: 36 aggtgcagttcaagaaagctgtgg 13
>51734_ptc-miR396a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 70 aggtgcagttcaataaagctgtgg 93
||||||||||||| ||||||||||
Sbjct: 36 aggtgcagttcaagaaagctgtgg 13
>48945_osa-miR396a:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gcagttcaataaagctgtggga 95
||||||||||||||||||||||
Sbjct: 123 gcagttcaataaagctgtggga 144
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>54870_vvi-miR396c:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactg 21
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>48486_gcl-miR396b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
||||| |||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatc 25
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
