miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48493_ghr-miR162a:pmrd
Length = 148
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 83
Query: 61 catgaatcgatcgataaacctctgcatccag 91
|||||||||||||||||||||||||||||||
Sbjct: 84 catgaatcgatcgataaacctctgcatccag 114
>48423_cpa-miR162a:pmrd
Length = 109
Score = 93.7 bits (47), Expect = 2e-20
Identities = 83/91 (91%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 60
||||||||||||||||||||||||||||||| ||| |||| ||||| || | |||| | |
Sbjct: 13 ctggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaaatcacaga-a 69
Query: 61 catgaatcgatcgataaacctctgcatccag 91
|||||||||||||||||||||||||||||||
Sbjct: 70 catgaatcgatcgataaacctctgcatccag 100
>54387_rco-miR162:pmrd
Length = 96
Score = 81.8 bits (41), Expect = 8e-17
Identities = 82/93 (88%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacacaaa 58
|||||||||||||||||||||||||||||| || |||||||||||| | | || |||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaa 62
Query: 59 tacatgaatcgatcgataaacctctgcatccag 91
|||||||||||||||||||||||||||||||
Sbjct: 63 cgcatgaatcgatcgataaacctctgcatccag 95
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctg 41
>48690_mdo-miR162:pmrd
Length = 88
Score = 61.9 bits (31), Expect = 7e-11
Identities = 79/91 (86%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 60
||||||||| |||||||||||||| || ||||| |||||||||||| | |||||| |
Sbjct: 1 ctggaggcatcggttcatcgatctgtttatgaga-ttttgttgtgagta-aacacagtt- 57
Query: 61 catgaatcgatcgataaacctctgcatccag 91
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
>48682_llu-miR162:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatccag 91
|||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
>48545_gma-miR162a:pmrd
Length = 102
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatccag 91
|||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccag 93
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
||||| ||||||||||||||||||||||||||
Sbjct: 10 ctggatgcagcggttcatcgatctcttcctga 41
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatccag 91
||||||| |||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccag 109
>54784_vvi-miR162:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
||||| ||||||||||||||||||||||||||
Sbjct: 9 ctggatgcagcggttcatcgatctcttcctga 40
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
|||||||||||||||||||||||| |||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctga 63
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
|||||||||||||||||||||||| |||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctga 65
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
|||||||||||||||||||||||| |||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctga 65
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
|||||||||||||||||||||||| |||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctga 63
>51618_ptc-miR162c:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
|||||||||||||||||||||||| |||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctga 42
>51617_ptc-miR162b:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
|||||||||||||||||||||||| |||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctga 42
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatccag 91
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatccag 91
|||||||||| |||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatccag 87
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 64 gaatcgatcgataaacctctgcatccag 91
||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccag 15
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgagaat 36
||||||||||||||||||||||| |||||| ||||
Sbjct: 102 ctggaggcagcggttcatcgatcaattcctgtgaat 67
>46938_ath-miR162b:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatccag 91
||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccag 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgagaat 36
||||||||||||||||||||||| |||||| ||||
Sbjct: 12 ctggaggcagcggttcatcgatcaattcctgtgaat 47
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctga 32
||||| |||||||||||||||||| |||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctga 55
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 tggaggcagcggttcatcgatctcttcctga 32
|||| |||||||||||||||||| |||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctga 31
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatccag 91
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatccag 91
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatccag 91
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatccag 91
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tcgataaacctctgcatccag 91
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tcgataaacctctgcatccag 91
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
