miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48377_bna-miR399:pmrd
Length = 102
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 cagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcat 61
Query: 61 tgatttgtagtgagttctctgccaaaggagatttgcccgg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgatttgtagtgagttctctgccaaaggagatttgcccgg 101
>47015_ath-miR399a:pmrd
Length = 123
Score = 125 bits (63), Expect = 6e-30
Identities = 92/101 (91%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 1 cagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcat 60
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 11 cagggtaagatctctattggcaggaaaccattacttagatctttgcatctctttatgcat 70
Query: 61 tgattt---gtagtgagttctctgccaaaggagatttgccc 98
|| ||| ||||||||| |||||||||||||||||||||
Sbjct: 71 tgcttttaattagtgagttatctgccaaaggagatttgccc 111
>47020_ath-miR399f:pmrd
Length = 118
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 64 tttgtagtgagttctctgccaaaggagatttgcccgg 100
||||| ||||| |||||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcccgg 108
>54881_vvi-miR399e:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 ctctgccaaaggagatttgcccgg 100
||||||||||||||||||||||||
Sbjct: 79 ctctgccaaaggagatttgcccgg 102
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttctctgccaaaggagatttgccc 98
||||||||||||||||||||||||
Sbjct: 61 ttctctgccaaaggagatttgccc 84
>47018_ath-miR399d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttctctgccaaaggagatttgccc 98
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>48969_osa-miR399f:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctctgccaaaggagatttgccc 98
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>54494_sbi-miR399f:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ctctgccaaaggagatttgccc 98
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 80 tgccaaaggagatttgcccgg 100
|||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccgg 5
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 80 tgccaaaggagatttgcccgg 100
|||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccgg 5
>51749_ptc-miR399c:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgcccgg 100
|||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccgg 117
>51748_ptc-miR399b:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgcccgg 100
|||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccgg 117
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tctgccaaaggagatttgccc 98
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>48754_mtr-miR399e:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tctgccaaaggagatttgccc 98
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tctgccaaaggagatttgccc 98
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>47019_ath-miR399e:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 ctctgccaaaggagatttgcc 97
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgccc 98
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54493_sbi-miR399e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgccc 98
||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgccc 105
>51756_ptc-miR399j:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 ctctgccaaaggagatttgcccgg 100
||||||||||||||||||| ||||
Sbjct: 79 ctctgccaaaggagatttgtccgg 102
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgccc 98
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgccc 98
||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgccc 103
>48968_osa-miR399e:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgccc 98
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
