miRNEST 2.0, an integrative microRNA resource :: BLAST
>51603_ptc-miR159b:pmrd
Length = 187
Score = 73.8 bits (37), Expect = 4e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 103 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 162
||||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaaggg 171
Query: 163 agctc 167
|||||
Sbjct: 172 agctc 176
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 32 tgctgggtagatcaagctgctggactatggatccca 67
||||||||||||| |||||||| ||||| ||||||
Sbjct: 41 tgctgggtagatcgagctgctgagctatgaatccca 76
>54540_sly-miR159:pmrd
Length = 177
Score = 58.0 bits (29), Expect = 2e-09
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 106 ttgcatatttcaggagctttatt--accttttagtttgatctttatttggattgaaggga 163
|||||||| |||||||||||||| ||| ||| |||||||| || |||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacccttt-gtttgatcattttttggattgaaggga 171
Query: 164 gctc 167
||||
Sbjct: 172 gctc 175
>48699_mtr-miR159a:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 133 tttagtttgatctttatttggattgaagggagctc 167
|||||||| |||||| |||||||||||||||||||
Sbjct: 132 tttagtttaatctttctttggattgaagggagctc 166
>51602_ptc-miR159a:pmrd
Length = 183
Score = 52.0 bits (26), Expect = 1e-07
Identities = 118/145 (81%), Gaps = 4/145 (2%)
Strand = Plus / Plus
Query: 23 agaggatcttgctgggtagatcaagctgctggactatggatcccaaaagtcctatcctct 82
||||| ||||||||||||||| |||||||| |||||||||| | |||||||| || |
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc--acagtcctat-ctat 88
Query: 83 aattttaagggtaggcttatggcttgcatatttcaggagctttattaccttttagtttga 142
| | |||| |||| || ||||||||||| |||||||||||||| ||| | ||| ||
Sbjct: 89 caactgaaggataggtttgcggcttgcatatctcaggagctttattgcctaat-gttaga 147
Query: 143 tctttatttggattgaagggagctc 167
|| | |||||||||||||||||||
Sbjct: 148 tccctttttggattgaagggagctc 172
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 5e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 103 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 162
||||||||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagctttattgcctaat-gttagatccctttttggattgaaggg 162
Query: 163 agctc 167
|||||
Sbjct: 163 agctc 167
Score = 46.1 bits (23), Expect = 8e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 23 agaggatcttgctgggtagatcaagctgctggactatggatcc 65
||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 27 agaggttcttgctgggtagattaagctgctaagctatggatcc 69
>51604_ptc-miR159c:pmrd
Length = 183
Score = 50.1 bits (25), Expect = 5e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 103 ggcttgcatatttcaggagctttattaccttttagtttgatctttatttggattgaaggg 162
||||||||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagctttattgcctaat-gttagatccctttttggattgaaggg 167
Query: 163 agctc 167
|||||
Sbjct: 168 agctc 172
Score = 46.1 bits (23), Expect = 8e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 23 agaggatcttgctgggtagatcaagctgctggactatggatcc 65
||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 32 agaggttcttgctgggtagattaagctgctaagctatggatcc 74
>54777_vvi-miR159c:pmrd
Length = 190
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 94 taggcttatggcttgcatatttcaggagct 123
||||||| |||||||||||| |||||||||
Sbjct: 106 taggcttgtggcttgcatatctcaggagct 135
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 ttggattgaagggagctcca 169
||||||||||||||||||||
Sbjct: 26 ttggattgaagggagctcca 7
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 ttggattgaagggagctcca 169
||||||||||||||||||||
Sbjct: 185 ttggattgaagggagctcca 204
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 ttggattgaagggagctcca 169
||||||||||||||||||||
Sbjct: 174 ttggattgaagggagctcca 193
>48825_osa-miR159m:pmrd
Length = 249
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttgagctcctttctgtccaaaaag 24
||||||||||||| ||||||||||
Sbjct: 1 ttgagctcctttcggtccaaaaag 24
>48821_osa-miR159c:pmrd
Length = 197
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 ttggattgaagggagctcca 169
||||||||||||||||||||
Sbjct: 168 ttggattgaagggagctcca 187
>48819_osa-miR159a:pmrd
Length = 272
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttgagctcctttctgtccaaaaag 24
||||||||||||| ||||||||||
Sbjct: 11 ttgagctcctttcggtccaaaaag 34
>48796_oru-miR159:pmrd
Length = 274
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttgagctcctttctgtccaaaaag 24
||||||||||||| ||||||||||
Sbjct: 11 ttgagctcctttcggtccaaaaag 34
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 tttggattgaagggagctcc 168
||||||||||||||||||||
Sbjct: 195 tttggattgaagggagctcc 214
