miRNEST 2.0, an integrative microRNA resource :: BLAST
>48395_bra-miR159a:pmrd
Length = 185
Score = 252 bits (127), Expect = 8e-68
Identities = 168/178 (94%), Gaps = 4/178 (2%)
Strand = Plus / Plus
Query: 4 gctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatggatc 63
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
Query: 64 ccataagccctaa-ccttaaacatagaaaaaggattttggttatatggcttgcatatctc 122
||||||||||||| ||||| | ||| |||||||||| ||||||||||||| ||||||||
Sbjct: 68 ccataagccctaatccttatatata--aaaaggattt-ggttatatggcttacatatctc 124
Query: 123 aggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctct 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 125 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 252 bits (127), Expect = 8e-68
Identities = 168/178 (94%), Gaps = 4/178 (2%)
Strand = Plus / Plus
Query: 4 gctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatggatc 63
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 65
Query: 64 ccataagccctaa-ccttaaacatagaaaaaggattttggttatatggcttgcatatctc 122
||||||||||||| ||||| | ||| |||||||||| ||||||||||||| ||||||||
Sbjct: 66 ccataagccctaatccttatatata--aaaaggattt-ggttatatggcttacatatctc 122
Query: 123 aggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctct 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 123 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 248 bits (125), Expect = 1e-66
Identities = 169/181 (93%), Gaps = 2/181 (1%)
Strand = Plus / Plus
Query: 1 agagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgg 60
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 3 agagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgg 62
Query: 61 atcccataagccctaa-ccttaaacatagaaaaaggattttggttatatggcttgcatat 119
|||||||||||||||| |||| | | ||||||||||| |||||||||| ||||||||
Sbjct: 63 atcccataagccctaatccttgtaaagtaaaaaaggattt-ggttatatggattgcatat 121
Query: 120 ctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctc 181
Query: 180 t 180
|
Sbjct: 182 t 182
>46932_ath-miR159b:pmrd
Length = 196
Score = 95.6 bits (48), Expect = 1e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 agagctccttaaagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgg 60
|||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 4 agagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgg 63
Query: 61 atcccataagcc 72
||||||||||||
Sbjct: 64 atcccataagcc 75
>54378_pvu-miR159:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 cttctttggattgaagggagctct 180
||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 cttctttggattgaagggagctct 180
||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||||||||||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagcttta 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 aagctgctaagctatggatcc 64
|||||||||||||||||||||
Sbjct: 49 aagctgctaagctatggatcc 69
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 aagctgctaagctatggatcc 64
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||||||||||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 aagctgctaagctatggatcc 64
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48539_gma-miR159a:pmrd
Length = 214
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 cttctttggattgaagggagctct 180
||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctct 194
>48699_mtr-miR159a:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 158 ttctttggattgaagggagctct 180
|||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctct 167
>54930_zma-miR159a:pmrd
Length = 246
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>54777_vvi-miR159c:pmrd
Length = 190
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 tggcttgcatatctcaggagct 129
||||||||||||||||||||||
Sbjct: 114 tggcttgcatatctcaggagct 135
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>54631_sof-miR159d:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>54937_zma-miR159m:pmrd
Length = 457
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54931_zma-miR159b:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctct 201
>54673_tae-miR159a:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>54653_spr-miR159:pmrd
Length = 392
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>48701_mtr-miR159c:pmrd
Length = 44
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48657_hvv-miR159b:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48656_hvv-miR159a:pmrd
Length = 303
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctct 180
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
