miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48428_cpt-miR408:pmrd
          Length = 100

 Score =  184 bits (93), Expect = 8e-48
 Identities = 96/97 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 60

                                               
Query: 61 gctcctcccatgcgctgcctcttccctggctctctgc 97
          ||||||||||||| |||||||||||||||||||||||
Sbjct: 61 gctcctcccatgcactgcctcttccctggctctctgc 97




>51762_ptc-miR408:pmrd
          Length = 105

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 77/87 (88%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                      
Query: 7  aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 64
          |||||||||||||||||||||||||||||| | | ||||||  || || |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 70

                                     
Query: 65 ctcccatgcgctgcctcttccctggct 91
            ||||||| |||||||||||||||||
Sbjct: 71 tacccatgcactgcctcttccctggct 97




>53677_ptc-miRf11855-akr:pmrd
          Length = 79

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 70/80 (87%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                      
Query: 11 cggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctcctcc 68
          |||||||||||||||||||||||||| | | ||||||  || || |||||||||||  ||
Sbjct: 1  cggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctacc 59

                              
Query: 69 catgcgctgcctcttccctg 88
          ||||| ||||||||||||||
Sbjct: 60 catgcactgcctcttccctg 79




>48142_ath-miRf11042-akr:pmrd
          Length = 99

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                    
Query: 51 ctctgttttggctcctcccatgcgctgcctcttccctggctc 92
          |||||||||| |||  ||||||| ||||||||||||||||||
Sbjct: 45 ctctgttttgtctctacccatgcactgcctcttccctggctc 4




>47031_ath-miR408:pmrd
          Length = 218

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 51  ctctgttttggctcctcccatgcgctgcctcttccctggctc 92
           |||||||||| |||  ||||||| ||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142




>54892_vvi-miR408:pmrd
          Length = 107

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 53  ctgttttggctcctcccatgcgctgcctcttccctggctct 93
           ||||||| ||||  ||||||| |||||||||||||||||||
Sbjct: 60  ctgtttttgctctacccatgcactgcctcttccctggctct 100



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                   
Query: 7  aagacggggaacaggcagagcatggatggaaccattaacag 47
          ||||||||||  ||| || ||||||||||||| ||||||||
Sbjct: 7  aagacggggacgaggtagtgcatggatggaactattaacag 47




>54389_rco-miR408:pmrd
          Length = 129

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 52  tctgttttggctcctcccatgcgctgcctcttccctggct 91
           |||||||||||||  ||| ||| |||||||||||||||||
Sbjct: 72  tctgttttggctctacccctgcactgcctcttccctggct 111



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 6  aaagacggggaacaggcagagcatggatgg 35
          |||||| |||||||||||| ||||||||||
Sbjct: 24 aaagactgggaacaggcagtgcatggatgg 53




>54648_sof-miR408c:pmrd
          Length = 286

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 63  tcctcccatgcgctgcctcttccctggctc 92
           ||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269




>54647_sof-miR408b:pmrd
          Length = 286

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 63  tcctcccatgcgctgcctcttccctggctc 92
           ||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269




>54646_sof-miR408a:pmrd
          Length = 283

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 63  tcctcccatgcgctgcctcttccctggctc 92
           ||||||| ||| ||||||||||||||||||
Sbjct: 237 tcctcccctgcactgcctcttccctggctc 266




>51347_ppe-miR408:pmrd
          Length = 105

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 7  aagacggggaacaggcagagcatggatgga 36
          ||||| ||||||||| ||||||||||||||
Sbjct: 7  aagacagggaacaggtagagcatggatgga 36




>55104_zma-miR408:pmrd
          Length = 191

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 64  cctcccatgcgctgcctcttccctggctc 92
           |||||| ||| ||||||||||||||||||
Sbjct: 146 cctcccctgcactgcctcttccctggctc 174




>54499_sbi-miR408:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 63  tcctcccatgcgctgcctcttccctggct 91
           ||||||| ||| |||||||||||||||||
Sbjct: 177 tcctcccctgcactgcctcttccctggct 205




>48975_osa-miR408:pmrd
          Length = 213

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 64  cctcccatgcgctgcctcttccctggctc 92
           |||||| ||| ||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175




>46892_aqc-miR408:pmrd
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 68 ccatgcgctgcctcttccctggct 91
          |||||| |||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1