miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48377_bna-miR399:pmrd
Length = 102
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 ggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattga 64
Query: 61 tttgtagtgagttctctgccaaaggagatttgcc 94
||||||||||||||||||||||||||||||||||
Sbjct: 65 tttgtagtgagttctctgccaaaggagatttgcc 98
>47015_ath-miR399a:pmrd
Length = 123
Score = 119 bits (60), Expect = 4e-28
Identities = 86/94 (91%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 4 aagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattgattt 63
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 17 aagatctctattggcaggaaaccattacttagatctttgcatctctttatgcattgcttt 76
Query: 64 ---gtagtgagttctctgccaaaggagatttgcc 94
||||||||| ||||||||||||||||||||
Sbjct: 77 taattagtgagttatctgccaaaggagatttgcc 110
>47020_ath-miR399f:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 61 tttgtagtgagttctctgccaaaggagatttgcc 94
||||| ||||| ||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcc 105
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 ttctctgccaaaggagatttgcc 94
|||||||||||||||||||||||
Sbjct: 61 ttctctgccaaaggagatttgcc 83
>47018_ath-miR399d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 ttctctgccaaaggagatttgcc 94
|||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgcc 87
>48969_osa-miR399f:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tctctgccaaaggagatttgcc 94
||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgcc 104
>54881_vvi-miR399e:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 ctctgccaaaggagatttgcc 94
|||||||||||||||||||||
Sbjct: 79 ctctgccaaaggagatttgcc 99
>54494_sbi-miR399f:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 ctctgccaaaggagatttgcc 94
|||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcc 98
>47019_ath-miR399e:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 ctctgccaaaggagatttgcc 94
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>48970_osa-miR399g:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tctgccaaaggagatttgcc 94
||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcc 106
>48754_mtr-miR399e:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tctgccaaaggagatttgcc 94
||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcc 112
>48750_mtr-miR399a:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tctgccaaaggagatttgcc 94
||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcc 112
