miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48377_bna-miR399:pmrd
Length = 102
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattg 63
Query: 61 atttgtagtgagttctctgccaaaggagatttgccc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 64 atttgtagtgagttctctgccaaaggagatttgccc 99
>47015_ath-miR399a:pmrd
Length = 123
Score = 121 bits (61), Expect = 1e-28
Identities = 87/95 (91%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 5 aagatctctattggcagaaaaccattacttagatctttgcatctctttctgcattgattt 64
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 17 aagatctctattggcaggaaaccattacttagatctttgcatctctttatgcattgcttt 76
Query: 65 ---gtagtgagttctctgccaaaggagatttgccc 96
||||||||| |||||||||||||||||||||
Sbjct: 77 taattagtgagttatctgccaaaggagatttgccc 111
>47020_ath-miR399f:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 62 tttgtagtgagttctctgccaaaggagatttgccc 96
||||| ||||| |||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgccc 106
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ttctctgccaaaggagatttgccc 96
||||||||||||||||||||||||
Sbjct: 61 ttctctgccaaaggagatttgccc 84
>47018_ath-miR399d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ttctctgccaaaggagatttgccc 96
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>48969_osa-miR399f:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 tctctgccaaaggagatttgccc 96
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>54881_vvi-miR399e:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 ctctgccaaaggagatttgccc 96
||||||||||||||||||||||
Sbjct: 79 ctctgccaaaggagatttgccc 100
>54494_sbi-miR399f:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 ctctgccaaaggagatttgccc 96
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tctgccaaaggagatttgccc 96
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>48754_mtr-miR399e:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tctgccaaaggagatttgccc 96
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tctgccaaaggagatttgccc 96
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>47019_ath-miR399e:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 ctctgccaaaggagatttgcc 95
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ctgccaaaggagatttgccc 96
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54493_sbi-miR399e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ctgccaaaggagatttgccc 96
||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgccc 105
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ctgccaaaggagatttgccc 96
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ctgccaaaggagatttgccc 96
||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgccc 103
>48968_osa-miR399e:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ctgccaaaggagatttgccc 96
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
