miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48395_bra-miR159a:pmrd
          Length = 185

 Score =  274 bits (138), Expect = 2e-74
 Identities = 168/178 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatgg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 5   agggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatga 64

                                                                       
Query: 61  ataccataagccctaatccttgtattgaaaaaggacttggtaatatggcttgcatatctc 120
           || |||||||||||||||||| |||  |||||||| ||||| ||||||||| ||||||||
Sbjct: 65  atcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctc 124

                                                                     
Query: 121 aggagctttaacttaccctttaattgcttttactcttctttggattgaagggagctct 178
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 182




>48339_bna-miR159:pmrd
          Length = 183

 Score =  274 bits (138), Expect = 2e-74
 Identities = 168/178 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatgg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 3   agggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatga 62

                                                                       
Query: 61  ataccataagccctaatccttgtattgaaaaaggacttggtaatatggcttgcatatctc 120
           || |||||||||||||||||| |||  |||||||| ||||| ||||||||| ||||||||
Sbjct: 63  atcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctc 122

                                                                     
Query: 121 aggagctttaacttaccctttaattgcttttactcttctttggattgaagggagctct 178
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 180




>46931_ath-miR159a:pmrd
          Length = 184

 Score =  226 bits (114), Expect = 4e-60
 Identities = 162/177 (91%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 63
           |||||||| |||||||||  ||||| ||| ||||||||||||||||||||||||||||| 
Sbjct: 6   gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 65

                                                                       
Query: 64  ccataagccctaatccttgtattg--aaaaaggacttggtaatatggcttgcatatctca 121
           |||||||||||||||||||||  |  |||||||| ||||| |||||| ||||||||||||
Sbjct: 66  ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 125

                                                                    
Query: 122 ggagctttaacttaccctttaattgcttttactcttctttggattgaagggagctct 178
           ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 126 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctct 182




>46932_ath-miR159b:pmrd
          Length = 196

 Score = 77.8 bits (39), Expect = 3e-15
 Identities = 62/67 (92%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                       
Query: 113 catatctcaggagctttaacttaccc-tttaattgcttttactcttctttggattgaagg 171
           ||||||||||||||||| |||||||| |||||| ||||  ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180

                  
Query: 172 gagctct 178
           |||||||
Sbjct: 181 gagctct 187



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                      
Query: 4  gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 63
          |||||||  |||||||  ||| ||||||| |||| ||| |||||||||||||||||||| 
Sbjct: 7  gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66

                   
Query: 64 ccataagcc 72
          |||||||||
Sbjct: 67 ccataagcc 75




>54378_pvu-miR159:pmrd
          Length = 174

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 155 cttctttggattgaagggagctct 178
           ||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172




>54377_pvu-miR159:pmrd
          Length = 174

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 155 cttctttggattgaagggagctct 178
           ||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172




>52093_ptc-miRf10271-akr:pmrd
          Length = 174

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 ggcttgcatatctcaggagcttta 130
           ||||||||||||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagcttta 127



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168




>51604_ptc-miR159c:pmrd
          Length = 183

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 ggcttgcatatctcaggagcttta 130
           ||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173




>51603_ptc-miR159b:pmrd
          Length = 187

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 ggcttgcatatctcaggagcttta 130
           ||||||||||||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177




>51602_ptc-miR159a:pmrd
          Length = 183

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 ggcttgcatatctcaggagcttta 130
           ||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173




>48539_gma-miR159a:pmrd
          Length = 214

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 155 cttctttggattgaagggagctct 178
           ||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctct 194




>48699_mtr-miR159a:pmrd
          Length = 168

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 156 ttctttggattgaagggagctct 178
           |||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctct 167




>54930_zma-miR159a:pmrd
          Length = 246

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226




>54777_vvi-miR159c:pmrd
          Length = 190

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 106 tggcttgcatatctcaggagct 127
           ||||||||||||||||||||||
Sbjct: 114 tggcttgcatatctcaggagct 135



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179




>54674_tae-miR159b:pmrd
          Length = 255

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249




>54631_sof-miR159d:pmrd
          Length = 265

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245




>54629_sof-miR159b:pmrd
          Length = 266

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246




>54628_sof-miR159a:pmrd
          Length = 265

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245




>54392_sar-miR159:pmrd
          Length = 175

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174




>51338_pgl-miR159:pmrd
          Length = 226

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225




>48825_osa-miR159m:pmrd
          Length = 249

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248




>48820_osa-miR159b:pmrd
          Length = 188

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177




>48819_osa-miR159a:pmrd
          Length = 272

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261




>48796_oru-miR159:pmrd
          Length = 274

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 tctttggattgaagggagctct 178
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261




>54937_zma-miR159m:pmrd
          Length = 457

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20




>54931_zma-miR159b:pmrd
          Length = 221

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctct 201




>54673_tae-miR159a:pmrd
          Length = 177

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173




>54653_spr-miR159:pmrd
          Length = 392

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20




>54540_sly-miR159:pmrd
          Length = 177

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 110 ttgcatatctcaggagctttaacttacccttt 141
           |||||||| ||||||||||||  |||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacccttt 144



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176




>48701_mtr-miR159c:pmrd
          Length = 44

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20




>48686_ltu-miR159:pmrd
          Length = 345

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20




>48657_hvv-miR159b:pmrd
          Length = 174

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173




>48656_hvv-miR159a:pmrd
          Length = 303

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 tttggattgaagggagctct 178
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20