miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51564_pta-miR396:pmrd
          Length = 119

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccacagctttcttgaactttacgtgtacgggacgaggagattctgatttctacgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  ttccacagctttcttgaactttacgtgtacgggacgaggagattctgatttctacgtctg 76

                                      
Query: 61  cgattaaagttcaagaaaactgtggga 87
           |||||||||||||||||||||||||||
Sbjct: 77  cgattaaagttcaagaaaactgtggga 103




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttccacagctttcttgaacttt 22
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttccacagctttcttgaacttt 22
          ||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttt 32




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttccacagctttcttgaacttt 22
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaactt 23




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaactt 23




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaactt 34



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 3  ccacagctttcttgaactt 21
          |||||||||||||||||||
Sbjct: 95 ccacagctttcttgaactt 77




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactt 41




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   ttccacagctttcttgaactt 21
           |||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaactt 114




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   ttccacagctttcttgaactt 21
           |||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaactt 122




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaactt 73




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   ttccacagctttcttgaactt 21
           |||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaactt 114




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaactt 26




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactt 41




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ttccacagctttcttgaactt 21
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactt 41




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   ttccacagctttcttgaact 20
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttccacagctttcttgaact 20
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>54584_smo-miR396:pmrd
          Length = 168

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 3   ccacagctttcttgaactt 21
           |||||||||||||||||||
Sbjct: 153 ccacagctttcttgaactt 135