miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48529_gma-miR156b:pmrd
Length = 120
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 cagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggagtg 83
Query: 61 tgccctctcttcctctg 77
|||||||||||||||||
Sbjct: 84 tgccctctcttcctctg 100
>48676_lja-miR157b:pmrd
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttgttgggagt 59
|||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||
Sbjct: 5 cagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgggagt 64
Query: 60 gtgccctctcttcctctg 77
|||| ||| |||| ||||
Sbjct: 65 gtgctctcccttcttctg 82
>51601_ptc-miR156k:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttgttgg 55
|||||||||| ||||||||||| | ||| ||||||| |||||||||| ||||||||
Sbjct: 14 cagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgttgg 69
>54766_vvi-miR156a:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 2e-07
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggagtg 60
|||||||||| ||||||||||| | | ||||||| | ||||||| ||| |||||||||
Sbjct: 14 cagaagagagggagcacaacccagcatcagctaaag-actctttgcttttcttgggagtg 72
Query: 61 tgccctctcttcctctg 77
||| |||||||| ||||
Sbjct: 73 tgctctctcttcttctg 89
>46857_ahy-miR157k:pmrd
Length = 139
Score = 50.1 bits (25), Expect = 2e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccg-ggaatggctaaaggagtctttgcctttgttgggagt 59
||||||||||||||||||||||| | ||||| |||| | ||| ||||||||||||||
Sbjct: 25 cagaagagagagagcacaacccgagaaatggtcaaagaatcttttacctttgttgggagt 84
Query: 60 gtgccctct 68
|||| ||||
Sbjct: 85 gtgctctct 93
>48811_osa-miR156k:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccgg 24
||||||||||||||||||||||||
Sbjct: 14 cagaagagagagagcacaacccgg 37
>46903_aqc-miR529:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 9e-07
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttgttgggagt 59
|||||||||||||||||||||| | ||||||| |||||||| | ||||||||||||
Sbjct: 21 cagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgttgggagt 80
Query: 60 gtgc 63
||||
Sbjct: 81 gtgc 84
>54920_zma-miR156j:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaaccc 22
||||||||||||||||||||||
Sbjct: 24 cagaagagagagagcacaaccc 45
>54396_sbi-miR156d:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaaccc 22
||||||||||||||||||||||
Sbjct: 24 cagaagagagagagcacaaccc 45
>54624_sof-miR156f:pmrd
Length = 46
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaac 20
||||||||||||||||||||
Sbjct: 4 cagaagagagagagcacaac 23
>54531_sin-miR157:pmrd
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccg 23
|||||||||||||||||| ||||
Sbjct: 5 cagaagagagagagcacagcccg 27
>54530_sin-miR156:pmrd
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccg 23
|||||||||||||||||| ||||
Sbjct: 4 cagaagagagagagcacagcccg 26
>54371_pts-miR156c:pmrd
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaa 19
|||||||||||||||||||
Sbjct: 4 cagaagagagagagcacaa 22
>51409_ppt-miR529d:pmrd
Length = 136
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaacccg 23
|||||||||||||||||| ||||
Sbjct: 36 cagaagagagagagcacagcccg 58
>48674_lja-miR156:pmrd
Length = 47
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaa 19
|||||||||||||||||||
Sbjct: 4 cagaagagagagagcacaa 22
>48536_gma-miR156i:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaa 19
|||||||||||||||||||
Sbjct: 4 cagaagagagagagcacaa 22
>46920_ath-miR156p:pmrd
Length = 47
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagagagcacaa 19
|||||||||||||||||||
Sbjct: 4 cagaagagagagagcacaa 22
