miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48540_gma-miR159b:pmrd
Length = 186
Score = 321 bits (162), Expect = 9e-89
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 1 gagttccctgcactccaagtctgaaaggatatgatggtaaacctctactgctagttcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagttccctgcactccaagtctgaaaggatatgatggtaaacctctactgctagttcatg 72
Query: 61 gatacctctgacttcttaacaacatgcgttcgaagtcaagggtttgcatgccctgggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 gatacctctgacttcttaacaacatgcgttcgaagtcaagggtttgcatgccctgggaga 132
Query: 121 tgagtttaccttgatcttttggtattggagtgaagggagctc 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tgagtttaccttgatcttttggtattggagtgaagggagctc 174
>48541_gma-miR159c:pmrd
Length = 185
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 127 taccttgatcttttggtattggagtgaagggagctc 162
|||||||||||||| |||||||||||||||||||||
Sbjct: 137 taccttgatcttttagtattggagtgaagggagctc 172
>51607_ptc-miR159f:pmrd
Length = 201
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 cttttggtattggagtgaagggagctc 162
||||| |||||||||||||||||||||
Sbjct: 165 ctttttgtattggagtgaagggagctc 191
>51606_ptc-miR159e:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 3e-05
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 98 aagggtttgcatgccctgggagatgagtttaccttgatctttt-ggtattggagtgaagg 156
|||||| |||||| || ||||||| | || |||||||||||| ||| |||| |||||||
Sbjct: 116 aagggtctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagg 175
Query: 157 gagctc 162
||||||
Sbjct: 176 gagctc 181
>54775_vvi-miR159a:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 100 gggtttgcatgccctgggagatgagtttaccttgatcttt-tggtattggagtgaaggga 158
|||| |||||| ||| ||||| | | || ||||||||||| ||| ||||||||||||||
Sbjct: 119 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 178
Query: 159 gctc 162
||||
Sbjct: 179 gctc 182
>48822_osa-miR159d:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 100 gggtttgcatgccctgggagatga 123
||||||||||| ||||||||||||
Sbjct: 111 gggtttgcatgacctgggagatga 134
