miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48578_gma-miR396a:pmrd
Length = 140
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatccaaagagttcctttgcatgcatgccatggcactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatccaaagagttcctttgcatgcatgccatggcactct 80
Query: 61 tactcccaaatcttgttttgcggttcaataaagctgtggga 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tactcccaaatcttgttttgcggttcaataaagctgtggga 121
>48485_gcl-miR396a:pmrd
Length = 101
Score = 161 bits (81), Expect = 1e-40
Identities = 96/101 (95%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaactgcatccaaagagttcctttgcatgcatgccatggcactct 60
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatccatagagttccttggcatgcatgccatggcactct 42
Query: 61 tactcccaaatcttgttttgcggttcaataaagctgtggga 101
| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 41 tgctcccacaccttgttttgcggttcaataaagctgtggga 1
>48486_gcl-miR396b:pmrd
Length = 101
Score = 123 bits (62), Expect = 3e-29
Identities = 94/102 (92%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatccaaagagttcctttgcatgcatgccatggca-ctc 59
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct: 1 ttccatagctttcttgaactgcatccatagagttccttrgcatgcatgccatggcatctc 60
Query: 60 ttactcccaaatcttgttttgcggttcaataaagctgtggga 101
| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 61 -tgctcccacaccttgttttgcggttcaataaagctgtggga 101
>48680_lja-miR396:pmrd
Length = 108
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 71 tcttgttttgcggttcaataaagctgtggga 101
|||| ||||||||||||||||||||||||||
Sbjct: 64 tcttattttgcggttcaataaagctgtggga 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaactgcat 39
>55083_zma-miR396l:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatc 25
>55079_zma-miR396h:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcatc 28
>55073_zma-miR396b:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
>54645_sof-miR396:pmrd
Length = 134
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
>54486_sbi-miR396b:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
>48946_osa-miR396b:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcatc 25
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatc 35
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 tttgcggttcaataaagctgtggga 101
|||||||||||||||||||||||||
Sbjct: 124 tttgcggttcaataaagctgtggga 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 tttgcggttcaataaagctgtggga 101
|||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtggga 141
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>46887_aqc-miR396a:pmrd
Length = 122
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 tttgcggttcaataaagctgtggga 101
|||||||||||||||||||||||||
Sbjct: 96 tttgcggttcaataaagctgtggga 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55074_zma-miR396c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcat 27
>55072_zma-miR396a:pmrd
Length = 137
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
>54871_vvi-miR396d:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 ttgcggttcaataaagctgtggga 101
||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtggga 108
>54485_sbi-miR396a:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgcat 24
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
>51734_ptc-miR396a:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 ttgcggttcaataaagctgtggga 101
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>48508_ghr-miR396c:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 ttgcggttcaataaagctgtggga 101
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 ttgcggttcaataaagctgtggga 101
||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaactgca 31
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 tgcggttcaataaagctgtggga 101
|||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtggga 122
>51735_ptc-miR396b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 tgcggttcaataaagctgtggga 101
|||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtggga 124
>48945_osa-miR396a:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgca 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactgc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>54870_vvi-miR396c:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactg 21
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
