miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50070_osa-miRf10855-akr:pmrd
Length = 78
Score = 71.9 bits (36), Expect = 8e-14
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattttccataaaatgacttacattg 73
|||||||||| ||||||||| |||||| |||||| |||||||| | |||||||||||
Sbjct: 77 tactccctccgtttcacaatgtaaatccttctagtattttccacattcggacttacattg 18
Query: 74 tgaaacgaaggaagta 89
||||||| ||||||||
Sbjct: 17 tgaaacggaggaagta 2
>49038_osa-miR809c:pmrd
Length = 155
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 14 tactccctccatttcacaatataaatcattctagcat 50
|||||||||||||||||||||||| ||||||||||||
Sbjct: 2 tactccctccatttcacaatataagtcattctagcat 38
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattt 52
|||| ||||||||||||||| ||| |||||||| |||||
Sbjct: 154 tacttcctccatttcacaatgtaagtcattctaacattt 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacgaaggaagtat 90
||||||||||||||||||| | |||||||||
Sbjct: 125 aatgacttacattgtgaaatggaggaagtat 155
>54707_tae-miR1132:pmrd
Length = 154
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 14 tactccctccatttcacaatataaatcattctagcattttcca 56
|||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 1 tactccctccgtttcacaatgtaagtcattctagcattttcca 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||| ||||
Sbjct: 30 aatgacttacattgtgaaacggagggagta 1
>49002_osa-miR441b:pmrd
Length = 152
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 57 taaaatgacttacattgtgaaacgaaggaagtat 90
|||||||||||||||||||||||| |||||||||
Sbjct: 48 taaaatgacttacattgtgaaacggaggaagtat 15
>49042_osa-miR809g:pmrd
Length = 152
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 57 taaaatgacttacattgtgaaacgaaggaagt 88
|||||||||||||||||||||||| |||||||
Sbjct: 32 taaaatgacttacattgtgaaacggaggaagt 1
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacg 80
|||||||||||||||||||||
Sbjct: 124 aatgacttacattgtgaaacg 144
>49039_osa-miR809d:pmrd
Length = 167
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 14 tactccctccatttcacaatataaatcattctagcattt 52
|||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 9 tactccctccgtttcacaatgtaagtcattctagcattt 47
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||||||||
Sbjct: 133 aatgacttacattgtgaaacggaggaagta 162
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||| ||||
Sbjct: 38 aatgacttacattgtgaaacggagggagta 9
>49036_osa-miR809a:pmrd
Length = 161
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattt 52
|||||||||||||||||||| ||| |||||||| |||||
Sbjct: 158 tactccctccatttcacaatgtaagtcattctaacattt 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacg 80
|||||||||||||||||||||
Sbjct: 32 aatgacttacattgtgaaacg 12
>50265_osa-miRf11050-akr:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||||||||
Sbjct: 64 aatgacttacattgtgaaacggaggaagta 93
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattt 52
|||| ||||| ||||||||| ||| ||||||||||||||
Sbjct: 93 tacttcctccgtttcacaatgtaagtcattctagcattt 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 14 tactccctccatttcacaatataaatcattctagca 49
||||||||| ||||||||| ||| |||||||||||
Sbjct: 1 tactccctctgtttcacaatgtaagtcattctagca 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaac 79
||||||||||||||||||||
Sbjct: 30 aatgacttacattgtgaaac 11
>49035_osa-miR808:pmrd
Length = 152
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 cctccatttcacaatataaatcattctagcattttcca 56
||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 5 cctccgtttcacaatgtaagtcattctagcattttcca 42
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacgaaggaagt 88
||||||||||||||||||||| |||||||
Sbjct: 29 aatgacttacattgtgaaacggaggaagt 1
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 15 actccctccatttcacaatataaatcattct 45
||||||||||||||||||| ||| |||||||
Sbjct: 152 actccctccatttcacaatgtaagtcattct 122
>50348_osa-miRf11133-akr:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 14 tactccctccatttcacaatataaatcattctagcattttc 54
|||||||||| ||||||||| ||| | ||||||||||||||
Sbjct: 1 tactccctccgtttcacaatgtaagttattctagcattttc 41
>50347_osa-miRf11132-akr:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattttc 54
|||||||||| ||||||||| ||| | ||||||||||||||
Sbjct: 107 tactccctccgtttcacaatgtaagttattctagcattttc 67
>50020_osa-miRf10805-akr:pmrd
Length = 111
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 atgacttacattgtgaaacgaaggaagta 89
|||||||||||||||||||| ||||||||
Sbjct: 80 atgacttacattgtgaaacggaggaagta 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacg 80
|||||||||||||||||||||
Sbjct: 33 aatgacttacattgtgaaacg 13
>49037_osa-miR809b:pmrd
Length = 152
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 actactccctccatttcacaatataaatcattctagcattt 52
|||||||||||| ||||||||| ||| |||||||| |||||
Sbjct: 147 actactccctccgtttcacaatgtaagtcattctaacattt 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tttcacaatataaatcattctagcattt 52
||||||||||||| ||||||||||||||
Sbjct: 20 tttcacaatataagtcattctagcattt 47
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||| ||||
Sbjct: 116 aatgacttacattgtgaaacggagggagta 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/35 (91%), Gaps = 2/35 (5%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacgaaggaagtatttag 94
||||||||| ||||||||| ||||||||||||||
Sbjct: 38 aatgacttatattgtgaaa--aaggaagtatttag 6
>49001_osa-miR441a:pmrd
Length = 153
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 actactccctccatttcacaatataaatcattctagcattt 52
|||||||||||| ||||||||| ||| ||||| ||||||||
Sbjct: 144 actactccctccgtttcacaatgtaagtcattttagcattt 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 taaaatgacttacattgtgaaacgaaggaagta 89
|||||||||||||||||||||||| ||| ||||
Sbjct: 110 taaaatgacttacattgtgaaacggagggagta 142
>49369_osa-miRf10154-akr:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattttcca 56
|||| ||||| |||||||| ||| ||||||||||||||||||
Sbjct: 104 tacttcctccgtttcacaacgtaagtcattctagcattttcca 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||| ||||
Sbjct: 30 aatgacttacattgtgaaacggagggagta 1
>49041_osa-miR809f:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 14 tactccctccatttcacaatataaatcattctagcattt 52
|||| ||||| ||||||||| |||||||||||| |||||
Sbjct: 154 tacttcctccgtttcacaatttaaatcattctaacattt 116
>49388_osa-miRf10173-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||||||||||||| ||| ||||
Sbjct: 67 aatgacttacattgtgaaacggagggagta 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 12 actactccctccatttcacaatataaatcatt 43
|||||||||||| ||||||||| ||| |||||
Sbjct: 98 actactccctccgtttcacaatgtaagtcatt 67
>49017_osa-miR446:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacgaaggaagta 89
||||||||||| |||||||| |||||||||
Sbjct: 37 aatgacttacactgtgaaacaaaggaagta 8
>49003_osa-miR441c:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 acttacattgtgaaacgaaggaagta 89
||||||||||||||||| ||||||||
Sbjct: 129 acttacattgtgaaacggaggaagta 154
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 57 taaaatgacttacattgtgaaacgaaggaagta 89
|||||||||||||||| |||||| ||||||||
Sbjct: 33 taaaatgacttacattatgaaacagaggaagta 1
>51229_osa-miRf12014-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaacg 80
|||||||||||||||||||||
Sbjct: 21 aatgacttacattgtgaaacg 1
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 aatgacttacattgtgaaacg 80
|||||||||||||||||||||
Sbjct: 118 aatgacttacattgtgaaacg 138
>49644_osa-miRf10429-akr:pmrd
Length = 136
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 65 cttacattgtgaaacgaaggaagta 89
|||||||||||||||| ||||||||
Sbjct: 112 cttacattgtgaaacggaggaagta 136
>49043_osa-miR809h:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 aatgacttacattgtgaaac 79
||||||||||||||||||||
Sbjct: 20 aatgacttacattgtgaaac 1
