miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48630_gra-miR157a:pmrd
Length = 101
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgcatccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgcatccca 68
Query: 61 ctcctttgtgctctttatgcttctg 85
|||||||||||||||||||||||||
Sbjct: 69 ctcctttgtgctctttatgcttctg 93
>48631_gra-miR157b:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 51 atgcatcccactcctttgtgctctttatgcttctg 85
|||||||||||||||||||||||| ||||||||||
Sbjct: 49 atgcatcccactcctttgtgctctctatgcttctg 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatggtgt 29
|||||||||||||||||||||||||||||
Sbjct: 9 cagaagatagagagcacagatgatggtgt 37
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctctttatgcttctg 85
||||||||||||||||||||||| ||||||||||
Sbjct: 47 tgcatcccactcctttgtgctctctatgcttctg 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatggtgtgcaat 34
||||||||||||||||||||||||| | ||||||
Sbjct: 7 cagaagatagagagcacagatgatgatatgcaat 40
>51600_ptc-miR156j:pmrd
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctctttatgcttctg 85
||||||||||||||||||||||| ||||||||||
Sbjct: 55 tgcatcccactcctttgtgctctctatgcttctg 88
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatggtgtgcaat 34
||||||||||||||||||||||||| | ||||||
Sbjct: 15 cagaagatagagagcacagatgatgatatgcaat 48
>54772_vvi-miR156g:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatggtgtgca 32
||||||||||||||||||||||||| ||||||
Sbjct: 15 cagaagatagagagcacagatgatgatgtgca 46
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctct 74
|||||| ||||||||||||||||
Sbjct: 54 tgcatctcactcctttgtgctct 76
>46862_aqc-miR156b:pmrd
Length = 83
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctctttatgcttctg 85
|||||| |||||||||||||||| ||||||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctg 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatgatg 28
>54774_vvi-miR156i:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatg 39
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 53 gcatcccactcctttgtgctctttatgcttctg 85
||||| |||||||||||||||| ||| ||||||
Sbjct: 55 gcatctcactcctttgtgctctctattcttctg 87
>51599_ptc-miR156i:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatg 39
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 cactcctttgtgctctttatgcttctg 85
|||||||||||||||| ||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctg 88
>51597_ptc-miR156g:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatg 39
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctct 74
|||||| ||||||||||||||||
Sbjct: 58 tgcatctcactcctttgtgctct 80
>48790_nta-miR157:pmrd
Length = 131
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagatgatg 29
>48697_mtr-miR156h:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacagatgatg 34
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 53 gcatcccactcctttgtgctctttatgcttctg 85
||||| || ||||||||||||||||| ||||||
Sbjct: 54 gcatctcattcctttgtgctctttattcttctg 86
>48695_mtr-miR156e:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacagatgatg 34
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 cactcctttgtgctctttatgcttctg 85
|||||||||||||||| ||||||||||
Sbjct: 138 cactcctttgtgctctctatgcttctg 164
>48531_gma-miR156d:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 25 cagaagatagagagcacagatgatg 49
>46924_ath-miR157a:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
|||||||||||||||||||||||||
Sbjct: 8 cagaagatagagagcacagatgatg 32
>46925_ath-miR157b:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgat 24
||||||||||||||||||||||||
Sbjct: 23 cagaagatagagagcacagatgat 46
>46861_aqc-miR156a:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatga 23
|||||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacagatga 26
>48537_gma-miR157c:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 cagaagatagagagcacagatgatg 25
||||||||||||||||| |||||||
Sbjct: 80 cagaagatagagagcactgatgatg 56
>48532_gma-miR156e:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagatgatg 25
||||||||||||||||| |||||||
Sbjct: 25 cagaagatagagagcactgatgatg 49
>54570_smo-miR156b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>48642_han-miR157a:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacaga 24
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctct 74
|||||| ||||||||||||||||
Sbjct: 49 tgcatctcactcctttgtgctct 71
>51598_ptc-miR156h:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 tgcatcccactcctttgtgctct 74
|||||| ||||||||||||||||
Sbjct: 58 tgcatctcactcctttgtgctct 80
