miRNEST 2.0, an integrative microRNA resource :: BLAST
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 71.9 bits (36), Expect = 2e-13
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||||||||
Sbjct: 8 gagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgga 66
Query: 61 tcccacagtcctatgtatca 80
| |||||||||||| |||||
Sbjct: 67 t-ccacagtcctatctatca 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 tttttggattgaagggagctc 188
|||||||||||||||||||||
Sbjct: 147 tttttggattgaagggagctc 167
>51604_ptc-miR159c:pmrd
Length = 183
Score = 71.9 bits (36), Expect = 2e-13
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgga 71
Query: 61 tcccacagtcctatgtatca 80
| |||||||||||| |||||
Sbjct: 72 t-ccacagtcctatctatca 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 tttttggattgaagggagctc 188
|||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctc 172
>51602_ptc-miR159a:pmrd
Length = 183
Score = 71.9 bits (36), Expect = 2e-13
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagctatgga 71
Query: 61 tcccacagtcctatgtatca 80
| |||||||||||| |||||
Sbjct: 72 t-ccacagtcctatctatca 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 tttttggattgaagggagctc 188
|||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctc 172
>54777_vvi-miR159c:pmrd
Length = 190
Score = 60.0 bits (30), Expect = 6e-10
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 11 gagctccttgaagtccaatagagggtcttact-gggtagattgagctgctgacttatgga 69
Query: 61 tcccacagtcctat 74
|||||||| |||||
Sbjct: 70 tcccacagccctat 83
Score = 56.0 bits (28), Expect = 1e-08
Identities = 67/78 (85%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 112 gataggcttgtggcttgcatatttctggagcttcattaccccttaagttt-taccctttt 170
|||||||||||||||||||||| || |||||| ||||| || |||||| | |||| |
Sbjct: 104 gataggcttgtggcttgcatatctcaggagctgcattatcc---aagtttagatccttgt 160
Query: 171 ttggattgaagggagctc 188
||||||||||||||||||
Sbjct: 161 ttggattgaagggagctc 178
>48539_gma-miR159a:pmrd
Length = 214
Score = 58.0 bits (29), Expect = 2e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| |||| ||| | |||| |||||||||||| |||||||||
Sbjct: 23 gagctccttgaagtccaattgaggatcttact-gggtgaattgagctgcttagctatgga 81
Query: 61 tcccacagt 69
|||||||||
Sbjct: 82 tcccacagt 90
Score = 56.0 bits (28), Expect = 1e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 118 cttgtggcttgcatatttctggagcttcattacccctta-agttttacccttttttggat 176
|||||||||| ||||||| ||||||||||| || ||| ||| ||| |||| |||||||
Sbjct: 122 cttgtggcttccatatttggggagcttcatttgcctttatagtattaaccttctttggat 181
Query: 177 tgaagggagctc 188
||||||||||||
Sbjct: 182 tgaagggagctc 193
>54378_pvu-miR159:pmrd
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 attgagctgctgagctatggatcccacagt 69
||||||||||| ||||||||||||||||||
Sbjct: 42 attgagctgcttagctatggatcccacagt 71
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 ccttttttggattgaagggagctc 188
|||| |||||||||||||||||||
Sbjct: 148 ccttctttggattgaagggagctc 171
>54377_pvu-miR159:pmrd
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 attgagctgctgagctatggatcccacagt 69
||||||||||| ||||||||||||||||||
Sbjct: 42 attgagctgcttagctatggatcccacagt 71
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 ccttttttggattgaagggagctc 188
|||| |||||||||||||||||||
Sbjct: 148 ccttctttggattgaagggagctc 171
>51603_ptc-miR159b:pmrd
Length = 187
Score = 52.0 bits (26), Expect = 2e-07
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatgga 60
|||||||||||||||||| ||| | || || ||||| || |||||||||||||||| |
Sbjct: 13 gagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagctatgaa 71
Query: 61 tcccacagtcctat 74
|||||||| |||||
Sbjct: 72 tcccacagccctat 85
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 ttttttggattgaagggagctc 188
||||||||||||||||||||||
Sbjct: 155 ttttttggattgaagggagctc 176
>54540_sly-miR159:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 37 taaattgagctgctgagctatggatcccacagtcctat 74
|||||||||||||||| |||||||| || ||| |||||
Sbjct: 38 taaattgagctgctgacctatggattcctcagccctat 75
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 ttttttggattgaagggagctc 188
||||||||||||||||||||||
Sbjct: 154 ttttttggattgaagggagctc 175
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 159 ttttacccttttttggattgaagggagctc 188
|||||| ||| |||||||||||||||||||
Sbjct: 152 ttttactcttctttggattgaagggagctc 181
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 159 ttttacccttttttggattgaagggagctc 188
|||||| ||| |||||||||||||||||||
Sbjct: 150 ttttactcttctttggattgaagggagctc 179
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 159 ttttacccttttttggattgaagggagctc 188
|||||| ||| |||||||||||||||||||
Sbjct: 152 ttttactcttctttggattgaagggagctc 181
>51338_pgl-miR159:pmrd
Length = 226
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 gataggcttgtggcttgcat 131
||||||||||||||||||||
Sbjct: 150 gataggcttgtggcttgcat 169
