miRNEST 2.0, an integrative microRNA resource :: BLAST
>54387_rco-miR162:pmrd
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggagattttttgttctg-aactgcaat-aaa 58
|||||||||||||||||||||||||||||||| | ||||||| || ||| ||| |||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctgga-agattttgttgtgaaacaaaaataaaa 62
Query: 59 cacatgaatcgatcgataaacctctgcatcca 90
| ||||||||||||||||||||||||||||||
Sbjct: 63 cgcatgaatcgatcgataaacctctgcatcca 94
>48493_ghr-miR162a:pmrd
Length = 148
Score = 69.9 bits (35), Expect = 3e-13
Identities = 80/91 (87%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggagattttttgttctga-actgcaataaac 59
|||||||||||||||||||||||||||||| ||| |||| ||| ||| | | | |||
Sbjct: 25 tggaggcagcggttcatcgatctcttcctg-agaatttt-gttgtgagaataacacaaat 82
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||||||
Sbjct: 83 acatgaatcgatcgataaacctctgcatcca 113
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctggagatttttt 40
||||||||||||||||||||||| |||||| |||||||||
Sbjct: 93 tggaggcagcggttcatcgatcttttcctgaagatttttt 54
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctggagatttttt 40
||||||||||||||||||||||| |||||| |||||||||
Sbjct: 95 tggaggcagcggttcatcgatcttttcctgaagatttttt 56
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctggagatttttt 40
||||||||||||||||||||||| |||||| |||||||||
Sbjct: 95 tggaggcagcggttcatcgatcttttcctgaagatttttt 56
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctggagatttttt 40
||||||||||||||||||||||| |||||| |||||||||
Sbjct: 93 tggaggcagcggttcatcgatcttttcctgaagatttttt 54
>51618_ptc-miR162c:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggagatttttt 40
||||||||||||||||||||||| |||||| |||||||||
Sbjct: 12 tggaggcagcggttcatcgatcttttcctgaagatttttt 51
>51617_ptc-miR162b:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggagatttttt 40
||||||||||||||||||||||| |||||| |||||||||
Sbjct: 12 tggaggcagcggttcatcgatcttttcctgaagatttttt 51
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctgg 31
|||||||||||||||||||||||||||||||
Sbjct: 94 tggaggcagcggttcatcgatctcttcctgg 64
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctgg 31
|||||||||||||||||||||||||||||||
Sbjct: 94 tggaggcagcggttcatcgatctcttcctgg 64
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgg 31
|||||||||||||||||||||||||||||||
Sbjct: 12 tggaggcagcggttcatcgatctcttcctgg 42
>48423_cpa-miR162a:pmrd
Length = 109
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgg 31
|||||||||||||||||||||||||||||||
Sbjct: 14 tggaggcagcggttcatcgatctcttcctgg 44
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||||||
Sbjct: 69 acatgaatcgatcgataaacctctgcatcca 99
>48682_llu-miR162:pmrd
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatcca 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| ||||||||| |||||||||||||||
Sbjct: 2 tggaagcagcggtttatcgatctcttcctg 31
>48545_gma-miR162a:pmrd
Length = 102
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatcca 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 11 tggatgcagcggttcatcgatctcttcctg 40
>46937_ath-miR162a:pmrd
Length = 140
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 26 tggaggcagcggttcatcgatctcttcctg 55
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||| ||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatcca 108
>48834_osa-miR162a:pmrd
Length = 171
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatcca 162
>48707_mtr-miR162d:pmrd
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatcca 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcctg 31
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 85 tggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatcca 16
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 101 tggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatcca 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 13 tggaggcagcggttcatcgatc 34
>54784_vvi-miR162:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 10 tggatgcagcggttcatcgatctcttcctg 39
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatcca 92
>54948_zma-miR162b:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatcca 129
>54542_sly-miR162:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatcca 98
>48836_osa-miR162m:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||| ||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatcca 113
>48835_osa-miR162b:pmrd
Length = 134
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||| ||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatcca 123
>48690_mdo-miR162:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||| ||||||||||| ||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatcca 87
>48685_lsa-miR162:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 tcgataaacctctgcatcca 90
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
>48546_gma-miR162m:pmrd
Length = 367
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 tcgataaacctctgcatcca 90
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
