miRNEST 2.0, an integrative microRNA resource :: BLAST
>46937_ath-miR162a:pmrd
Length = 140
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgtg 33
|||||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctgtg 57
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 74 taaaagcacgaacagatcgataaacctctgcatccag 110
|||||||| ||| ||||||||||||||||||||||||
Sbjct: 73 taaaagcatgaatagatcgataaacctctgcatccag 109
>54387_rco-miR162:pmrd
Length = 96
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 73 gatcgataaacctctgcatccag 95
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||| |||||||||||||||||||||||
Sbjct: 35 gaaccgatcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||| |||||||||||||||||||||||
Sbjct: 35 gaaccgatcgataaacctctgcatccag 8
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctg 41
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||| |||||||||||||||||||||||
Sbjct: 71 gaaccgatcgataaacctctgcatccag 98
>48493_ghr-miR162a:pmrd
Length = 148
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctg 54
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 92 gatcgataaacctctgcatccag 114
>48423_cpa-miR162a:pmrd
Length = 109
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 13 ctggaggcagcggttcatcgatctcttcctg 43
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 78 gatcgataaacctctgcatccag 100
>54784_vvi-miR162:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||||||||||
Sbjct: 9 ctggatgcagcggttcatcgatctcttcctg 39
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccag 110
|||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccag 93
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 37 cacgaaccgatcgataaacctctgcatccag 7
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctg 64
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 39 cacgaaccgatcgataaacctctgcatccag 9
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctg 66
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 39 cacgaaccgatcgataaacctctgcatccag 9
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctg 66
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 37 cacgaaccgatcgataaacctctgcatccag 7
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctg 64
>51618_ptc-miR162c:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctg 41
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 68 cacgaaccgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||| ||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctg 41
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 cacgaacagatcgataaacctctgcatccag 110
||||||| |||||||||||||||||||||||
Sbjct: 68 cacgaaccgatcgataaacctctgcatccag 98
>48545_gma-miR162a:pmrd
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||||||||||
Sbjct: 10 ctggatgcagcggttcatcgatctcttcctg 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 71 gatcgataaacctctgcatccag 93
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgtg 33
||||||||||||||||||||||| ||||||||
Sbjct: 102 ctggaggcagcggttcatcgatcaattcctgtg 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 75 aaaagcacgaacagatcgataaacctctgcatccag 110
||||||| ||| |||||||||||||||||||||||
Sbjct: 50 aaaagcaagaatcgatcgataaacctctgcatccag 15
>46938_ath-miR162b:pmrd
Length = 111
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgtg 33
||||||||||||||||||||||| ||||||||
Sbjct: 12 ctggaggcagcggttcatcgatcaattcctgtg 44
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 75 aaaagcacgaacagatcgataaacctctgcatccag 110
||||||| ||| |||||||||||||||||||||||
Sbjct: 64 aaaagcaagaatcgatcgataaacctctgcatccag 99
>48834_osa-miR162a:pmrd
Length = 171
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 141 gatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccag 110
|||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccag 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||||||||||| |||| ||||||||||
Sbjct: 28 gaacagatcgatgaaccgctgcatccag 1
>48706_mtr-miR162c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 tcgataaacctctgcatcca 109
||||||||||||||||||||
Sbjct: 20 tcgataaacctctgcatcca 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 83 gaacagatcgataaacctctgcatccag 110
|||||||||||| |||| ||||||||||
Sbjct: 59 gaacagatcgatgaaccgctgcatccag 86
>48682_llu-miR162:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
||||| ||||||||| |||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctg 31
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gatcgataaacctctgcatccag 110
|||||||||||||||||||||||
Sbjct: 58 gatcgataaacctctgcatccag 80
>48705_mtr-miR162b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tggaggcagcggttcatcgatctcttcctg 31
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatcca 109
||||||||||||||||||||
Sbjct: 66 tcgataaacctctgcatcca 85
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccag 110
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccag 110
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccag 110
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 tcgataaacctctgcatccag 110
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatct 24
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
