miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48630_gra-miR157a:pmrd
Length = 101
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgcatc 65
Query: 61 ccactcctttgtgctctttatgcttctgtca 91
|||||||||||||||||||||||||||||||
Sbjct: 66 ccactcctttgtgctctttatgcttctgtca 96
>48631_gra-miR157b:pmrd
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 54 atgcatcccactcctttgtgctctttatgcttctgtca 91
|||||||||||||||||||||||| |||||||||||||
Sbjct: 49 atgcatcccactcctttgtgctctctatgcttctgtca 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatggtgt 32
||||||||||||||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcacagatgatggtgt 37
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
||||||||||||||||||||||| |||||||||||||
Sbjct: 47 tgcatcccactcctttgtgctctctatgcttctgtca 83
>51600_ptc-miR156j:pmrd
Length = 100
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
||||||||||||||||||||||| |||||||||||||
Sbjct: 55 tgcatcccactcctttgtgctctctatgcttctgtca 91
>54772_vvi-miR156g:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatggtgtgca 35
|||||||||||||||||||||||||||| ||||||
Sbjct: 12 tgacagaagatagagagcacagatgatgatgtgca 46
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
|||||| |||||||||||||||| || |||||||||
Sbjct: 54 tgcatctcactcctttgtgctctctagacttctgtca 90
>46862_aqc-miR156b:pmrd
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
|||||| |||||||||||||||| |||||||||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctgtca 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatg 28
>54774_vvi-miR156i:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacagatgatg 39
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 gcatcccactcctttgtgctctttatgcttctgtca 91
||||| |||||||||||||||| ||| |||||||||
Sbjct: 55 gcatctcactcctttgtgctctctattcttctgtca 90
>51599_ptc-miR156i:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacagatgatg 39
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 cactcctttgtgctctttatgcttctg 88
|||||||||||||||| ||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctg 88
>51597_ptc-miR156g:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacagatgatg 39
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
|||||| |||||||||||||||| || |||||||||
Sbjct: 58 tgcatctcactcctttgtgctctctagtcttctgtca 94
>48790_nta-miR157:pmrd
Length = 131
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcacagatgatg 29
>48697_mtr-miR156h:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcacagatgatg 34
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 gcatcccactcctttgtgctctttatgcttctgtca 91
||||| || ||||||||||||||||| |||||||||
Sbjct: 54 gcatctcattcctttgtgctctttattcttctgtca 89
>48695_mtr-miR156e:pmrd
Length = 172
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcacagatgatg 34
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 cactcctttgtgctctttatgcttctgtca 91
|||||||||||||||| |||||||||||||
Sbjct: 138 cactcctttgtgctctctatgcttctgtca 167
>48531_gma-miR156d:pmrd
Length = 151
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcacagatgatg 49
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 actcctttgtgctctttatgcttctgtca 91
||||||||||||||| ||| |||||||||
Sbjct: 103 actcctttgtgctctctatacttctgtca 131
>46924_ath-miR157a:pmrd
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
||||||||||||||||||||||||||||
Sbjct: 5 tgacagaagatagagagcacagatgatg 32
>46925_ath-miR157b:pmrd
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgat 27
|||||||||||||||||||||||||||
Sbjct: 20 tgacagaagatagagagcacagatgat 46
>46861_aqc-miR156a:pmrd
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatga 26
||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatga 26
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 ctttgtgctctttatgcttctgtca 91
||||||||||| |||||||||||||
Sbjct: 55 ctttgtgctctctatgcttctgtca 79
>48537_gma-miR157c:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tgacagaagatagagagcacagatgatg 28
|||||||||||||||||||| |||||||
Sbjct: 83 tgacagaagatagagagcactgatgatg 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 56 gcatcccactcctttgtgctctttatgcttctgtca 91
||||| |||||||||||||||| || |||||||||
Sbjct: 36 gcatctcactcctttgtgctctctagtcttctgtca 1
>48532_gma-miR156e:pmrd
Length = 124
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagatgatg 28
|||||||||||||||||||| |||||||
Sbjct: 22 tgacagaagatagagagcactgatgatg 49
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 56 gcatcccactcctttgtgctctttatgcttctgtca 91
||||| |||||||||||||||| || |||||||||
Sbjct: 69 gcatctcactcctttgtgctctctagtcttctgtca 104
>54570_smo-miR156b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>48642_han-miR157a:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcacaga 24
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 cactcctttgtgctctttatgcttctgtca 91
|||||||| ||||||| |||||||||||||
Sbjct: 56 cactccttcgtgctctctatgcttctgtca 85
>54771_vvi-miR156f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
|||||| |||||||||||||||| || |||||||||
Sbjct: 49 tgcatctcactcctttgtgctctctagtcttctgtca 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51598_ptc-miR156h:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
|||||| |||||||||||||||| || |||||||||
Sbjct: 58 tgcatctcactcctttgtgctctctagtcttctgtca 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>51552_pta-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>51551_pta-miR156a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>48696_mtr-miR156f:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcaca 27
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcaca 22
>48530_gma-miR156c:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 147 tgacagaagatagagagcaca 167
>54661_stu-miR157a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 tttgtgctctttatgcttctgtca 91
|||||||||| |||||||||||||
Sbjct: 67 tttgtgctctctatgcttctgtca 90
>54534_sly-miR156c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54532_sly-miR156a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 tttgtgctctttatgcttctgtca 91
|||||||||| |||||||||||||
Sbjct: 76 tttgtgctctctatgcttctgtca 99
>48393_bra-miR157a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 15 tgacagaagatagagagcac 34
>48384_bol-miR157a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 19 tgacagaagatagagagcac 38
>48337_bna-miR156b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 26 tgacagaagatagagagcac 45
>46927_ath-miR157d:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43
>46926_ath-miR157c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 25 tgacagaagatagagagcac 44
