miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54661_stu-miR157a:pmrd
Length = 91
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctc 60
Query: 61 acttcatttgtgctctctatgcttctgtca 90
||||||||||||||||||||||||||||||
Sbjct: 61 acttcatttgtgctctctatgcttctgtca 90
>54532_sly-miR156a:pmrd
Length = 100
Score = 125 bits (63), Expect = 6e-30
Identities = 89/99 (89%), Gaps = 9/99 (9%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgctaatttcatt---------cagcaa 51
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaa 60
Query: 52 aagcatctcacttcatttgtgctctctatgcttctgtca 90
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 aagcatctcaattcatttgtgctctctatgcttctgtca 99
>48790_nta-miR157:pmrd
Length = 131
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 50 aaaagcatctcacttcatttgtgctctctatgcttctgtca 90
|||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 90 aaaagcatctcaattcatttgtgctctctatgcttccgtca 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgat 31
||||||||||||||||||||| ||||||||
Sbjct: 1 ttgacagaagatagagagcacagatgatgat 31
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 3 ttgacagaagatagagagcacagatgatgatatgc 37
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
||||||||||||||||||||||||
Sbjct: 60 tttgtgctctctatgcttctgtca 83
>51600_ptc-miR156j:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgatatgc 45
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
||||||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctgtca 91
>48698_mtr-miR157:pmrd
Length = 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||| ||||||| ||||||||||
Sbjct: 1 ttgacagaagatagagggcactaaggatgatatgc 35
>48695_mtr-miR156e:pmrd
Length = 172
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 6 ttgacagaagatagagagcacagatgatgatatgc 40
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
||||||||||||||||||||||||
Sbjct: 144 tttgtgctctctatgcttctgtca 167
>48537_gma-miR157c:pmrd
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| ||||||| ||||
Sbjct: 84 ttgacagaagatagagagcactgatgatgaaatgc 50
>48532_gma-miR156e:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| ||||||| ||||
Sbjct: 21 ttgacagaagatagagagcactgatgatgaaatgc 55
>48531_gma-miR156d:pmrd
Length = 151
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||||||||
Sbjct: 21 ttgacagaagatagagagcacagatgatgatatgc 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
|||||||||||||| |||||||||
Sbjct: 108 tttgtgctctctatacttctgtca 131
>48393_bra-miR157a:pmrd
Length = 149
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 14 ttgacagaagatagagagcactaaggatgacatgc 48
>48384_bol-miR157a:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 6 ttgacagaagatagagagcactaaggatgacatgc 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
|||||||||||||| |||||||||
Sbjct: 78 tttgtgctctctatacttctgtca 101
>48338_bna-miR156c:pmrd
Length = 155
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 18 ttgacagaagatagagagcactaaggatgacatgc 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
|||||||||||||| |||||||||
Sbjct: 114 tttgtgctctctatacttctgtca 137
>48337_bna-miR156b:pmrd
Length = 208
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 25 ttgacagaagatagagagcactaaggatgacatgc 59
>46926_ath-miR157c:pmrd
Length = 217
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||||| ||||| ||||
Sbjct: 24 ttgacagaagatagagagcactaaggatgacatgc 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
|||||||||||||| |||||||||
Sbjct: 165 tttgtgctctctatacttctgtca 188
>46927_ath-miR157d:pmrd
Length = 221
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||||| |||| |||||
Sbjct: 24 tgacagaagatagagagcactaaggatgctatgc 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgtgctctctatgcttctgtca 90
||||||||||||||||||||||
Sbjct: 172 tgtgctctctatgcttctgtca 193
>46862_aqc-miR156b:pmrd
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||| ||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgc 34
Score = 50.1 bits (25), Expect = 3e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 54 gcatctcacttcatttgtgctctctatgcttctgtca 90
|||||||||| | ||||||||||||||||||||||||
Sbjct: 46 gcatctcactcc-tttgtgctctctatgcttctgtca 81
>54533_sly-miR156b:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgctaatt 40
||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 1 ttgacagaagatagagagcacgaataatgaggtgctaatt 40
>48631_gra-miR157b:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
||||||||||||||||||||||||
Sbjct: 63 tttgtgctctctatgcttctgtca 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagcac 25
>46861_aqc-miR156a:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
||||||||||||||||||||||||
Sbjct: 56 tttgtgctctctatgcttctgtca 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>54774_vvi-miR156i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgaaatgc 45
Score = 44.1 bits (22), Expect = 2e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 53 agcatctcacttcatttgtgctctctatgcttctgtca 90
||||||||||| | |||||||||||||| |||||||||
Sbjct: 54 agcatctcactcc-tttgtgctctctattcttctgtca 90
>54772_vvi-miR156g:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgat 31
||||||||||||||||||||| ||||||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgat 41
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| | ||||| ||||
Sbjct: 2 ttgacagaagatagagagcactgacgatgaaatgc 36
>51598_ptc-miR156h:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
|||||||||||||||||||||| | ||||| ||||
Sbjct: 11 ttgacagaagatagagagcactgacgatgaaatgc 45
>51597_ptc-miR156g:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 11 ttgacagaagatagagagcacagatgatgaaatgc 45
>48697_mtr-miR156h:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatgatatgc 35
||||||||||||||||||||| ||||||| ||||
Sbjct: 6 ttgacagaagatagagagcacagatgatgaaatgc 40
>46924_ath-miR157a:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcactaatgatga 30
||||||||||||||||||||| |||||||
Sbjct: 4 ttgacagaagatagagagcacagatgatga 33
>54771_vvi-miR156f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcac 31
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>51599_ptc-miR156i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 11 ttgacagaagatagagagcac 31
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctg 87
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
>48696_mtr-miR156f:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 6 ttgacagaagatagagagcac 26
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gtgctctctatgcttctgtca 90
|||||||||||||||||||||
Sbjct: 65 gtgctctctatgcttctgtca 85
>48630_gra-miR157a:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 5 ttgacagaagatagagagcac 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tttgtgctctctatgcttctgtca 90
|||||||||| |||||||||||||
Sbjct: 73 tttgtgctctttatgcttctgtca 96
>48530_gma-miR156c:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 146 ttgacagaagatagagagcac 166
>46925_ath-miR157b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagcac 21
|||||||||||||||||||||
Sbjct: 19 ttgacagaagatagagagcac 39
>54570_smo-miR156b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51552_pta-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51551_pta-miR156a:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagatagagagcac 21
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagatagagagca 20
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
