miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48395_bra-miR159a:pmrd
Length = 185
Score = 357 bits (180), Expect = 2e-99
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1 tagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatg 63
Query: 61 aatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatct 123
Query: 121 caggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctcta 183
>48339_bna-miR159:pmrd
Length = 183
Score = 357 bits (180), Expect = 2e-99
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1 tagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatg 61
Query: 61 aatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatct 121
Query: 121 caggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 caggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctcta 181
>46931_ath-miR159a:pmrd
Length = 184
Score = 244 bits (123), Expect = 2e-65
Identities = 165/178 (92%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 5 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 64
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 6 gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 65
Query: 65 ccataagccctaatccttatatat--aaaaaggatttggttatatggcttacatatctca 122
|||||||||||||||||| || | ||||||||||||||||||||| || |||||||||
Sbjct: 66 ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 125
Query: 123 ggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctcta 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 126 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctcta 183
>46932_ath-miR159b:pmrd
Length = 196
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 5 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 64
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 7 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66
Query: 65 ccataagcc 73
|||||||||
Sbjct: 67 ccataagcc 75
Score = 69.9 bits (35), Expect = 6e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 114 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 172
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
Query: 173 gagctct 179
|||||||
Sbjct: 181 gagctct 187
>54378_pvu-miR159:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 156 cttctttggattgaagggagctcta 180
|||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctcta 173
>54377_pvu-miR159:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 156 cttctttggattgaagggagctcta 180
|||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctcta 173
>48539_gma-miR159a:pmrd
Length = 214
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 156 cttctttggattgaagggagctcta 180
|||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctcta 195
>48699_mtr-miR159a:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 ttctttggattgaagggagctcta 180
||||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctcta 168
>54930_zma-miR159a:pmrd
Length = 246
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>54631_sof-miR159d:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>54777_vvi-miR159c:pmrd
Length = 190
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctcta 180
>54540_sly-miR159:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctcta 177
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctcta 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggcttacatatctcaggagcttta 131
||||| ||||||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagcttta 127
>51604_ptc-miR159c:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggcttacatatctcaggagcttta 131
||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>51603_ptc-miR159b:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctcta 178
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggcttacatatctcaggagcttta 131
||||| ||||||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136
>51602_ptc-miR159a:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggcttacatatctcaggagcttta 131
||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctcta 21
>48686_ltu-miR159:pmrd
Length = 345
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctcta 21
>54937_zma-miR159m:pmrd
Length = 457
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctct 179
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54931_zma-miR159b:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctct 179
||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctct 201
>54673_tae-miR159a:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctct 179
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>54653_spr-miR159:pmrd
Length = 392
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctct 179
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48824_osa-miR159f:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctcta 180
||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctcta 178
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctcta 180
||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctcta 20
>48657_hvv-miR159b:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctct 179
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48656_hvv-miR159a:pmrd
Length = 303
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctct 179
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
