miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51346_ppe-miR171:pmrd
          Length = 97

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 67

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatca 88




>51345_ppe-miR170:pmrd
          Length = 97

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 67

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatca 88




>54836_vvi-miR171i:pmrd
          Length = 103

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 70/80 (87%), Gaps = 2/80 (2%)
 Strand = Plus / Plus

                                                                      
Query: 2  gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 61
          ||||||||  ||||||||||||||||||  || |||  |||  |||||||||||||| ||
Sbjct: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctg 70

                              
Query: 62 attgagccgtgccaatatca 81
          ||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatca 90




>46877_aqc-miR171b:pmrd
          Length = 77

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 44 attgggtcctttaatttgattgagccgtgccaatatca 81
          ||||||||||||||| ||||||||||||||||||||||
Sbjct: 39 attgggtcctttaatctgattgagccgtgccaatatca 76




>54828_vvi-miR171a:pmrd
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 49 gtcctttaatttgattgagccgtgccaatatca 81
          |||||||||| ||||||||||||||||||||||
Sbjct: 57 gtcctttaatctgattgagccgtgccaatatca 89




>51691_ptc-miR171h:pmrd
          Length = 100

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatca 81
          ||||||| |||||| ||||||||||||||||||||||
Sbjct: 56 ttgggtcgtttaatctgattgagccgtgccaatatca 92




>51690_ptc-miR171g:pmrd
          Length = 100

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatca 81
          ||||||| |||||| ||||||||||||||||||||||
Sbjct: 56 ttgggtcttttaatctgattgagccgtgccaatatca 92




>46979_ath-miR171c:pmrd
          Length = 116

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 57  atttgattgagccgtgccaatatca 81
           |||||||||||||||||||||||||
Sbjct: 84  atttgattgagccgtgccaatatca 108




>55029_zma-miR171b:pmrd
          Length = 85

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatca 83




>54831_vvi-miR171d:pmrd
          Length = 100

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatca 88




>54830_vvi-miR171c:pmrd
          Length = 103

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91




>54462_sbi-miR171k:pmrd
          Length = 87

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatca 83




>54452_sbi-miR171a:pmrd
          Length = 161

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 58  tttgattgagccgtgccaatatca 81
           ||||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatca 143




>52725_ptc-miRf10903-akr:pmrd
          Length = 85

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatc 80
          |||||| |||| || |||||||||||||||||||||
Sbjct: 45 ttgggttctttcatctgattgagccgtgccaatatc 80




>51882_ptc-miRf10060-akr:pmrd
          Length = 87

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatca 84




>51692_ptc-miR171i:pmrd
          Length = 129

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 57  atttgattgagccgtgccaatatc 80
           ||||||||||||||||||||||||
Sbjct: 97  atttgattgagccgtgccaatatc 120




>51688_ptc-miR171e:pmrd
          Length = 94

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatc 80
          |||||| |||| || |||||||||||||||||||||
Sbjct: 50 ttgggttctttcatctgattgagccgtgccaatatc 85




>51685_ptc-miR171b:pmrd
          Length = 103

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatca 92




>51684_ptc-miR171a:pmrd
          Length = 104

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatca 93




>48897_osa-miR171c:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90




>48896_osa-miR171b:pmrd
          Length = 100

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91




>48403_bra-miR171a:pmrd
          Length = 85

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatca 83




>48386_bol-miR171a:pmrd
          Length = 96

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89




>48367_bna-miR171e:pmrd
          Length = 92

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatca 88




>48366_bna-miR171d:pmrd
          Length = 96

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89




>48312_bdi-miR171c:pmrd
          Length = 86

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 tttgattgagccgtgccaatatca 81
          ||||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatca 85




>55036_zma-miR171i:pmrd
          Length = 104

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 ttgattgagccgtgccaatatca 81
          |||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatca 86




>55033_zma-miR171f:pmrd
          Length = 155

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 59  ttgattgagccgtgccaatatca 81
           |||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatca 136




>54551_sly-miR171a:pmrd
          Length = 122

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 85  tttgattgagccgtgccaatatc 107




>48723_mtr-miR171g:pmrd
          Length = 105

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 78  tttgattgagccgtgccaatatc 100




>48722_mtr-miR171d:pmrd
          Length = 105

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 78  tttgattgagccgtgccaatatc 100




>46880_aqc-miR171e:pmrd
          Length = 102

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 58 tttgattgagccgtgccaatatc 80
          |||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1




>46879_aqc-miR171d:pmrd
          Length = 106

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 82  tttgattgagccgtgccaatatc 104




>46876_aqc-miR171a:pmrd
          Length = 102

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 58  tttgattgagccgtgccaatatc 80
           |||||||||||||||||||||||
Sbjct: 78  tttgattgagccgtgccaatatc 100




>55039_zma-miR171m:pmrd
          Length = 113

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  ttgattgagccgtgccaatatc 80
           ||||||||||||||||||||||
Sbjct: 92  ttgattgagccgtgccaatatc 113




>55037_zma-miR171j:pmrd
          Length = 129

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tgattgagccgtgccaatatca 81
           ||||||||||||||||||||||
Sbjct: 90  tgattgagccgtgccaatatca 111




>55024_zma-miR170m:pmrd
          Length = 115

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 59  ttgattgagccgtgccaatatc 80
           ||||||||||||||||||||||
Sbjct: 94  ttgattgagccgtgccaatatc 115




>54453_sbi-miR171b:pmrd
          Length = 132

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tgattgagccgtgccaatatca 81
           ||||||||||||||||||||||
Sbjct: 93  tgattgagccgtgccaatatca 114




>49676_osa-miRf10461-akr:pmrd
          Length = 123

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tgattgagccgtgccaatatca 81
           ||||||||||||||||||||||
Sbjct: 95  tgattgagccgtgccaatatca 116




>48900_osa-miR171f:pmrd
          Length = 127

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 60  tgattgagccgtgccaatatca 81
           ||||||||||||||||||||||
Sbjct: 97  tgattgagccgtgccaatatca 118




>55032_zma-miR171e:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 87  tgattgagccgtgccaatatc 107




>55031_zma-miR171d:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 82  tgattgagccgtgccaatatc 102




>54680_tae-miR170b:pmrd
          Length = 94

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 tgattgagccgtgccaatatc 80
          |||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94




>54579_smo-miR171a:pmrd
          Length = 135

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  gattgagccgtgccaatatca 81
           |||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatca 123




>54552_sly-miR171b:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 57 atttgattgagccgtgccaatatca 81
          |||| ||||||||||||||||||||
Sbjct: 59 atttaattgagccgtgccaatatca 83




>54460_sbi-miR171i:pmrd
          Length = 90

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 tgattgagccgtgccaatatc 80
          |||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88




>54455_sbi-miR171d:pmrd
          Length = 154

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135




>51689_ptc-miR171f:pmrd
          Length = 130

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121




>48905_osa-miR171n:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 tgattgagccgtgccaatatc 80
          |||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99




>48904_osa-miR171m:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 87  tgattgagccgtgccaatatc 107




>48899_osa-miR171e:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 89  tgattgagccgtgccaatatc 109




>48898_osa-miR171d:pmrd
          Length = 135

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125




>48894_osa-miR170b:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  tgattgagccgtgccaatatc 80
           |||||||||||||||||||||
Sbjct: 87  tgattgagccgtgccaatatc 107




>48893_osa-miR170a:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 tgattgagccgtgccaatatc 80
          |||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99




>48663_hvv-miR171:pmrd
          Length = 78

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 tgattgagccgtgccaatatc 80
          |||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78




>48662_hvv-miR170:pmrd
          Length = 78

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 tgattgagccgtgccaatatc 80
          |||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78




>48567_gma-miR171a:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatca 81
          ||||||||| |  ||| ||||||||||||||||||||
Sbjct: 53 ttgggtcctgttttttcattgagccgtgccaatatca 89




>48406_bra-miR171d:pmrd
          Length = 101

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91




>48405_bra-miR171c:pmrd
          Length = 88

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatca 85




>48404_bra-miR171b:pmrd
          Length = 104

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatca 92




>48365_bna-miR171c:pmrd
          Length = 88

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatca 85




>48364_bna-miR171b:pmrd
          Length = 101

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91




>48363_bna-miR171a:pmrd
          Length = 104

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatca 92




>46978_ath-miR171b:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 gattgagccgtgccaatatca 81
          |||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatca 96




>46881_aqc-miR171f:pmrd
          Length = 88

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 57 atttgattgagccgtgccaatatca 81
          |||| ||||||||||||||||||||
Sbjct: 59 atttaattgagccgtgccaatatca 83