miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48497_ghr-miR171:pmrd
Length = 85
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 61
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 62 ctcagattgagccgcgccaatat 84
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 85.7 bits (43), Expect = 4e-18
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
|||||||||||||||||||||||||||||||||| | | | | ||||||||||||
Sbjct: 9 atgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaatacgat 68
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 69 ctcagattgagccgcgccaatat 91
>51686_ptc-miR171c:pmrd
Length = 104
Score = 85.7 bits (43), Expect = 4e-18
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
|||||||||||||||||||||||||||||||||| | | | | ||||||||||||
Sbjct: 12 atgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaatacgat 71
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 72 ctcagattgagccgcgccaatat 94
>54832_vvi-miR171e:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 72/83 (86%), Gaps = 6/83 (7%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct: 13 atgttggtgaggttcaatccgaagacggatttacgaa------gagccgtaaagaacgat 66
Query: 61 ctcagattgagccgcgccaatat 83
||| |||||||||||||||||||
Sbjct: 67 ctctgattgagccgcgccaatat 89
>54554_sly-miR171d:pmrd
Length = 112
Score = 65.9 bits (33), Expect = 4e-12
Identities = 72/83 (86%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
||||||||||||||||||||||||||| ||||| | | ||| ||||||| |||||
Sbjct: 13 atgttggtgaggttcaatccgaagacgaatttatg--cttatt--ttcgtaaagaacgat 68
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 69 ctcagattgagccgcgccaatat 91
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 49 gtaaaatacgatctcagattgagccgcgccaatat 83
||||||| |||||||||||||||||||||||||||
Sbjct: 52 gtaaaatccgatctcagattgagccgcgccaatat 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttac 34
|||||||||||||||||||||||||| |||||||
Sbjct: 8 atgttggtgaggttcaatccgaagacagatttac 41
>51687_ptc-miR171d:pmrd
Length = 100
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 49 gtaaaatacgatctcagattgagccgcgccaatat 83
||||||| |||||||||||||||||||||||||||
Sbjct: 56 gtaaaatccgatctcagattgagccgcgccaatat 90
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaagacggatttac 34
|||||||||||||||||||||||||| |||||||
Sbjct: 12 atgttggtgaggttcaatccgaagacagatttac 45
>54833_vvi-miR171f:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 gatctcagattgagccgcgccaatat 83
||||||||||||||||||||||||||
Sbjct: 64 gatctcagattgagccgcgccaatat 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 atgttggtgaggttcaatccgaaga 25
||||||||||||||||||| |||||
Sbjct: 13 atgttggtgaggttcaatctgaaga 37
>51383_ppt-miR171b:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcagattgagccgcgccaatat 83
|||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatat 83
>51382_ppt-miR171a:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatat 83
||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatat 82
>54582_smo-miR171d:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tctcagattgagccgcgccaatat 83
||||| ||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatat 88
>55028_zma-miR171a:pmrd
Length = 99
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatat 98
>55027_zma-miR170p:pmrd
Length = 62
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 43 gattgagccgcgccaatat 61
>54910_zel-miR171:pmrd
Length = 65
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>54667_stu-miR171:pmrd
Length = 124
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>54666_stu-miR170:pmrd
Length = 124
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>54553_sly-miR171c:pmrd
Length = 121
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatat 97
>54461_sbi-miR171j:pmrd
Length = 108
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatat 102
>54458_sbi-miR171g:pmrd
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4 ttggtgaggttcaatccga 22
|||||||||||||||||||
Sbjct: 3 ttggtgaggttcaatccga 21
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatat 76
>54451_sbi-miR170:pmrd
Length = 55
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 36 gattgagccgcgccaatat 54
>51694_ptc-miR171k:pmrd
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatat 77
>51342_ppd-miR170:pmrd
Length = 297
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 278 gattgagccgcgccaatat 296
>48895_osa-miR171a:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4 ttggtgaggttcaatccga 22
|||||||||||||||||||
Sbjct: 14 ttggtgaggttcaatccga 32
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatat 86
>48636_gra-miR171:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>48569_gma-miR171m:pmrd
Length = 172
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 153 gattgagccgcgccaatat 171
>48484_gcl-miR171:pmrd
Length = 205
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 186 gattgagccgcgccaatat 204
>48407_bra-miR171e:pmrd
Length = 119
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatat 103
>48369_bna-miR171g:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatat 97
>48368_bna-miR171f:pmrd
Length = 119
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatat 103
>48313_bdi-miR171d:pmrd
Length = 107
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 82 gattgagccgcgccaatat 100
>48311_bdi-miR171a:pmrd
Length = 120
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatat 69
>46982_ath-miR171o:pmrd
Length = 339
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 320 gattgagccgcgccaatat 338
>46981_ath-miR171n:pmrd
Length = 461
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>46980_ath-miR171m:pmrd
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatat 91
>46977_ath-miR171a:pmrd
Length = 123
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatat 107
>46976_ath-miR170n:pmrd
Length = 172
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 153 gattgagccgcgccaatat 171
>46975_ath-miR170m:pmrd
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatat 91
>46853_ace-miR171c:pmrd
Length = 216
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 197 gattgagccgcgccaatat 215
>46852_ace-miR171b:pmrd
Length = 215
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 196 gattgagccgcgccaatat 214
>46851_ace-miR171a:pmrd
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>46850_ace-miR170d:pmrd
Length = 215
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 196 gattgagccgcgccaatat 214
>46849_ace-miR170c:pmrd
Length = 55
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
>46848_ace-miR170b:pmrd
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 57 gattgagccgcgccaatat 75
>46847_ace-miR170a:pmrd
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatat 83
|||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatat 20
