miRNEST 2.0, an integrative microRNA resource :: BLAST
>48423_cpa-miR162a:pmrd
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcct--gaatttggctgtggaagaacacaaagca 58
|||||||||||||||||||||||||||||| |||||||| |||| || | |||| | ||
Sbjct: 13 ctggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatcacagaaca 71
Query: 59 agaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 72 tgaatcgatcgataaacctctgcatccag 100
>48493_ghr-miR162a:pmrd
Length = 148
Score = 79.8 bits (40), Expect = 3e-16
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctga--atttggctgtg-gaagaacacaaag- 56
|||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 83
Query: 57 caagaatcggtcgataaacctctgcatccag 87
|| |||||| |||||||||||||||||||||
Sbjct: 84 catgaatcgatcgataaacctctgcatccag 114
>54784_vvi-miR162:pmrd
Length = 103
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaag 60
||||| ||||||||||||||||||||||||||| ||| |||| || || || | ||||
Sbjct: 9 ctggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatcaag 66
Query: 61 aatcggtcgataaacctctgcatccag 87
|||||||||||||||||||||||||||
Sbjct: 67 aatcggtcgataaacctctgcatccag 93
>48682_llu-miR162:pmrd
Length = 80
Score = 65.9 bits (33), Expect = 4e-12
Identities = 73/87 (83%), Gaps = 7/87 (8%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaag 60
||||| ||||||||| |||||||||||||||||||| || |||||||| || |
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaattt-------gattaacacaaaccatg 53
Query: 61 aatcggtcgataaacctctgcatccag 87
||||| |||||||||||||||||||||
Sbjct: 54 aatcgatcgataaacctctgcatccag 80
>54387_rco-miR162:pmrd
Length = 96
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccag 8
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctg 41
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 53 aaagcaagaatcggtcgataaacctctgcatccag 87
||||||||||||| |||||||||||||||||||||
Sbjct: 49 aaagcaagaatcgatcgataaacctctgcatccag 15
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 102 ctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 aaagcaagaatcggtcgataaacctctgcatccag 87
||||||||||||| |||||||||||||||||||||
Sbjct: 65 aaagcaagaatcgatcgataaacctctgcatccag 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatc 23
|||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctg 31
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aaagcaagaatcggtcgataaacctctgcatccag 87
|||||| |||| | |||||||||||||||||||||
Sbjct: 75 aaagcatgaatagatcgataaacctctgcatccag 109
>48545_gma-miR162a:pmrd
Length = 102
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaat 34
||||| ||||||||||||||||||||||||||||
Sbjct: 10 ctggatgcagcggttcatcgatctcttcctgaat 43
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatccag 93
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaa 33
|||||||||||||||||||||||| ||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaattt 36
||||| |||||||||||||||||| |||||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaattt 36
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 ctggaggcagcggttcatcgatctcttcctgaattt 36
||||| |||||||||||||||||| |||||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaattt 51
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 60 gaatcggtcgataaacctctgcatcca 86
|||||||||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 tggaggcagcggttcatcgatctcttcctgaattt 36
|||| |||||||||||||||||| |||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaattt 35
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatcca 86
|||||||||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gaatcggtcgataaacctctgcatccag 87
|||||||||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ctggaggcagcggttcatcgatct 24
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
>48836_osa-miR162m:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 51 acaaagcaagaatcggtcgataaacctctgcatccag 87
|||| ||| |||||| ||||||| |||||||||||||
Sbjct: 78 acaacgcaggaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 51 acaaagcaagaatcggtcgataaacctctgcatccag 87
|||| ||| |||||| ||||||| |||||||||||||
Sbjct: 88 acaacgcaggaatcgatcgataagcctctgcatccag 124
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tcgataaacctctgcatccag 87
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
