miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51603_ptc-miR159b:pmrd
Length = 187
Score = 287 bits (145), Expect = 1e-78
Identities = 159/166 (95%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 71
Query: 61 tcccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tcccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggag 131
Query: 121 ctttattacctaatgttagatcnnnnnnnggattgaagggagctct 166
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 132 ctttattacctaatgttagatctttttttggattgaagggagctct 177
>54777_vvi-miR159c:pmrd
Length = 190
Score = 85.7 bits (43), Expect = 1e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
||||||||||||||||||||||| | || | |||||||||| |||||||||| |||| |
Sbjct: 10 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 69
Query: 61 tcccacagccctatc 75
|||||||||||||||
Sbjct: 70 tcccacagccctatc 84
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 85.7 bits (43), Expect = 1e-17
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 99 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 158
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 101 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 160
Query: 159 ggagctct 166
||||||||
Sbjct: 161 ggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 85.7 bits (43), Expect = 1e-17
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 99 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 158
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 159 ggagctct 166
||||||||
Sbjct: 166 ggagctct 173
>51602_ptc-miR159a:pmrd
Length = 183
Score = 85.7 bits (43), Expect = 1e-17
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 99 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 158
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 159 ggagctct 166
||||||||
Sbjct: 166 ggagctct 173
>54378_pvu-miR159:pmrd
Length = 174
Score = 63.9 bits (32), Expect = 4e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
|||||||||||||||||||| || | || | |||||| ||| |||||||| ||||||| |
Sbjct: 3 ggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatgga 62
Query: 61 tcccacag 68
||||||||
Sbjct: 63 tcccacag 70
>54377_pvu-miR159:pmrd
Length = 174
Score = 63.9 bits (32), Expect = 4e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
|||||||||||||||||||| || | || | |||||| ||| |||||||| ||||||| |
Sbjct: 3 ggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatgga 62
Query: 61 tcccacag 68
||||||||
Sbjct: 63 tcccacag 70
>48539_gma-miR159a:pmrd
Length = 214
Score = 56.0 bits (28), Expect = 9e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaa 60
|||||||||||||||||||| || | || | |||||| || |||||||| ||||||| |
Sbjct: 22 ggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatgga 81
Query: 61 tcccacag 68
||||||||
Sbjct: 82 tcccacag 89
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 ttgcatatctcaggagcttta 125
|||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134
>48395_bra-miR159a:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 102 ggcttgcatatctcaggagcttta 125
||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134
>48339_bna-miR159:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 102 ggcttgcatatctcaggagcttta 125
||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132
