miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48663_hvv-miR171:pmrd
Length = 78
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagaccacgccggagggagccatctgcggcggcggttctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atgttggctcgactcactcagaccacgccggagggagccatctgcggcggcggttctgat 61
Query: 61 tgagccgtgccaatat 76
||||||||||||||||
Sbjct: 62 tgagccgtgccaatat 77
>48662_hvv-miR170:pmrd
Length = 78
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagaccacgccggagggagccatctgcggcggcggttctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atgttggctcgactcactcagaccacgccggagggagccatctgcggcggcggttctgat 61
Query: 61 tgagccgtgccaatat 76
||||||||||||||||
Sbjct: 62 tgagccgtgccaatat 77
>54680_tae-miR170b:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagaccacgcc 29
|||||||||||||||||||||||||||||
Sbjct: 2 atgttggctcgactcactcagaccacgcc 30
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatat 93
>55031_zma-miR171d:pmrd
Length = 121
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 cggcggttctgattgagccgtgccaatat 76
||||| |||||||||||||||||||||||
Sbjct: 73 cggcgtttctgattgagccgtgccaatat 101
>54460_sbi-miR171i:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 ggcggttctgattgagccgtgccaatat 76
|||| |||||||||||||||||||||||
Sbjct: 60 ggcgtttctgattgagccgtgccaatat 87
>55032_zma-miR171e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 84 ttctgattgagccgtgccaatat 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagac 23
||||||||||| |||||||||||
Sbjct: 22 atgttggctcggctcactcagac 44
>54455_sbi-miR171d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 112 ttctgattgagccgtgccaatat 134
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagaccac 26
||||||||||| ||||||||||||||
Sbjct: 22 atgttggctcggctcactcagaccac 47
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 76 ttctgattgagccgtgccaatat 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagac 23
||||||||||| |||||||||||
Sbjct: 2 atgttggctcggctcactcagac 24
>48899_osa-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatat 108
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagac 23
||||||||||| |||||||||||
Sbjct: 12 atgttggctcggctcactcagac 34
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatat 124
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ttctgattgagccgtgccaatat 76
|||||||||||||||||||||||
Sbjct: 76 ttctgattgagccgtgccaatat 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 atgttggctcgactcactcagac 23
||||||||||| |||||||||||
Sbjct: 2 atgttggctcggctcactcagac 24
>55037_zma-miR171j:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatat 109
>54836_vvi-miR171i:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatat 88
>54828_vvi-miR171a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatat 87
>54453_sbi-miR171b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatat 112
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 58 tctgattgagccgtgccaatat 79
>51691_ptc-miR171h:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatat 90
>51690_ptc-miR171g:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatat 90
>51689_ptc-miR171f:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatat 120
>51688_ptc-miR171e:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatat 84
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatat 114
>48904_osa-miR171m:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatat 106
>48900_osa-miR171f:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatat 116
>48894_osa-miR170b:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatat 106
>46877_aqc-miR171b:pmrd
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatat 74
>55039_zma-miR171m:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatat 112
>55036_zma-miR171i:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatat 84
>55033_zma-miR171f:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatat 134
>55029_zma-miR171b:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatat 81
>55024_zma-miR170m:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatat 114
>54831_vvi-miR171d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatat 86
>54830_vvi-miR171c:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatat 89
>54551_sly-miR171a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatat 106
>54462_sbi-miR171k:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatat 81
>54452_sbi-miR171a:pmrd
Length = 161
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatat 141
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatat 82
>51692_ptc-miR171i:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatat 119
>51685_ptc-miR171b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatat 90
>51684_ptc-miR171a:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatat 91
>51346_ppe-miR171:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatat 86
>51345_ppe-miR170:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatat 86
>48897_osa-miR171c:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatat 88
>48896_osa-miR171b:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatat 89
>48723_mtr-miR171g:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatat 99
>48722_mtr-miR171d:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatat 99
>48403_bra-miR171a:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatat 81
>48386_bol-miR171a:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatat 87
>48367_bna-miR171e:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatat 86
>48366_bna-miR171d:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatat 87
>48312_bdi-miR171c:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatat 83
>46979_ath-miR171c:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatat 106
>46880_aqc-miR171e:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatat 2
>46879_aqc-miR171d:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatat 103
>46876_aqc-miR171a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatat 76
||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatat 99
