miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51761_ptc-miR403c:pmrd
Length = 79
Score = 131 bits (66), Expect = 8e-32
Identities = 76/78 (97%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 ggtttgtgcgtggatctagaggccatcacaaccgtccactacaagaccacccaatggctt 60
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ggtttgtgcgtggatct-gaggccatcacaaccgtccactacacgaccacccaatggctt 59
Query: 61 tagattcacgcacaaact 78
||||||||||||||||||
Sbjct: 60 tagattcacgcacaaact 77
>51760_ptc-miR403b:pmrd
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 gtttgtgcgtggatctagaggccatcacaaccgtccactacaagaccacccaatggcttt 61
|||||| ||||||||| || |||||||||||||| || | || ||||| |||||||| ||
Sbjct: 14 gtttgttcgtggatct-gacgccatcacaaccgttcatttcacgaccatccaatggcgtt 72
Query: 62 agattcacgcacaaact 78
|||||||||||||||||
Sbjct: 73 agattcacgcacaaact 89
>54891_vvi-miR403f:pmrd
Length = 108
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaact 96
>54890_vvi-miR403e:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaact 103
>54889_vvi-miR403d:pmrd
Length = 86
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 56 ttagattcacgcacaaact 74
>54888_vvi-miR403c:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaact 103
>54887_vvi-miR403b:pmrd
Length = 86
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 56 ttagattcacgcacaaact 74
>54886_vvi-miR403a:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 85 ttagattcacgcacaaact 103
>51759_ptc-miR403a:pmrd
Length = 132
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaact 121
>51353_ppl-miR403:pmrd
Length = 135
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaact 121
>48413_bst-miR403:pmrd
Length = 124
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 90 ttagattcacgcacaaact 108
>47024_ath-miR403:pmrd
Length = 135
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 ttagattcacgcacaaact 78
|||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaact 121
