miRNEST 2.0, an integrative microRNA resource :: BLAST
>51762_ptc-miR408:pmrd
Length = 105
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 18 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 76
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggc 96
>54389_rco-miR408:pmrd
Length = 129
Score = 75.8 bits (38), Expect = 4e-15
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 2 ctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcact 61
|||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||
Sbjct: 29 ctgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacc 88
Query: 62 catgcactgcctcttccctggc 83
| ||||||||||||||||||||
Sbjct: 89 cctgcactgcctcttccctggc 110
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 75.8 bits (38), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 3 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 61
Query: 64 tgcactgcctcttccctg 81
||||||||||||||||||
Sbjct: 62 tgcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 4 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 63
|||||||||||||||||||||| | | |||||||| |||||||||||||| | | ||
Sbjct: 13 gggaacaggcagagcatggatggaaccattaacaggt--tctctgttttggctcctccca 70
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 71 tgcactgcctcttccctggc 90
>51347_ppe-miR408:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 6e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 46 ctgttttggcttcactcatgcactgcctcttccctggc 83
||||| ||||| |||||||||||||||||||||||||
Sbjct: 58 ctgttgtggctctactcatgcactgcctcttccctggc 95
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 ctcatgcactgcctcttccctggc 83
||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggc 113
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 44 ctctgttttggcttcactcatgcactgcctcttccctggc 83
|||||||||| || || ||||||||||||||||||||||
Sbjct: 45 ctctgttttgtctctacccatgcactgcctcttccctggc 6
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 44 ctctgttttggcttcactcatgcactgcctcttccctggc 83
|||||||||| || || ||||||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggc 140
>48584_gma-miR408a:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
|||||| ||||| | |||||||||||||| |||||||||
Sbjct: 82 tctgttgtggctacgctcatgcactgcctgttccctggc 120
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1 gctgggaacaggcagagcatggatgcagctattaacagaaa 41
||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 1 gctgggaacaggcagggcacgaatggagctatcaacagaaa 41
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 76 catgcactgcctcttccctggc 97
>46892_aqc-miR408:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggc 2
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 atgcactgcctcttccctggc 83
|||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 atgcactgcctcttccctggc 83
|||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctgg 82
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggc 172
>54690_tae-miR408:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156
>54649_sof-miR408d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196
>54648_sof-miR408c:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54647_sof-miR408b:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54646_sof-miR408a:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggc 264
>54499_sbi-miR408:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggc 204
>48975_osa-miR408:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggc 173
