miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51347_ppe-miR408:pmrd
          Length = 105

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9  gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 68

                                     
Query: 61 ctactcatgcactgcctcttccctggc 87
          |||||||||||||||||||||||||||
Sbjct: 69 ctactcatgcactgcctcttccctggc 95




>51762_ptc-miR408:pmrd
          Length = 105

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 51 tgttgtggctctactcatgcactgcctcttccctggc 87
          |||| ||||||||| ||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggc 96




>54892_vvi-miR408:pmrd
          Length = 107

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 48 agctgttgtggctctactcatgcactgcctcttccctggc 87
          ||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 58 agctgtttttgctctacccatgcactgcctcttccctggc 97




>53677_ptc-miRf11855-akr:pmrd
          Length = 79

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 51 tgttgtggctctactcatgcactgcctcttccctg 85
          |||| ||||||||| ||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79




>54389_rco-miR408:pmrd
          Length = 129

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctctactcatgcactgcctcttccctggc 87
           ||||| ||||||||| | ||||||||||||||||||||
Sbjct: 73  ctgttttggctctacccctgcactgcctcttccctggc 110




>48142_ath-miRf11042-akr:pmrd
          Length = 99

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
          ||||| || |||||| ||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggc 6



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                         
Query: 1  gacagggaacaggtagagcatggatggagtt 31
          ||||||||||| | ||||||||||| |||||
Sbjct: 94 gacagggaacaagcagagcatggattgagtt 64




>47031_ath-miR408:pmrd
          Length = 218

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctctactcatgcactgcctcttccctggc 87
           ||||| || |||||| ||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggc 140



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  gacagggaacaggtagagcatggatggagtt 31
          ||||||||||| | ||||||||||| |||||
Sbjct: 52 gacagggaacaagcagagcatggattgagtt 82




>51397_ppt-miR408b:pmrd
          Length = 144

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 64  ctcatgcactgcctcttccctggc 87
           ||||||||||||||||||||||||
Sbjct: 90  ctcatgcactgcctcttccctggc 113




>48584_gma-miR408a:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 50  ctgttgtggctctactcatgcactgcctcttccctggc 87
           |||||||||||   |||||||||||||| |||||||||
Sbjct: 83  ctgttgtggctacgctcatgcactgcctgttccctggc 120




>48428_cpt-miR408:pmrd
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 catgcactgcctcttccctggc 87
          ||||||||||||||||||||||
Sbjct: 69 catgcactgcctcttccctggc 90



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  gggaacaggtagagcatggatgga 28
          ||||||||| ||||||||||||||
Sbjct: 13 gggaacaggcagagcatggatgga 36




>46892_aqc-miR408:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 66 catgcactgcctcttccctggc 87
          ||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggc 2




>54585_smo-miR408:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 67 atgcactgcctcttccctggc 87
          |||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96




>51566_pta-miR408:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 67 atgcactgcctcttccctggc 87
          |||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84




>48317_bdi-miR408:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 66 catgcactgcctcttccctgg 86
          |||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88




>55104_zma-miR408:pmrd
          Length = 191

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggc 172




>54690_tae-miR408:pmrd
          Length = 187

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156




>54649_sof-miR408d:pmrd
          Length = 215

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196




>54648_sof-miR408c:pmrd
          Length = 286

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267




>54647_sof-miR408b:pmrd
          Length = 286

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267




>54646_sof-miR408a:pmrd
          Length = 283

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggc 264




>54499_sbi-miR408:pmrd
          Length = 205

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggc 204




>48975_osa-miR408:pmrd
          Length = 213

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgcactgcctcttccctggc 87
           ||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggc 173