miRNEST 2.0, an integrative microRNA resource :: BLAST
>48395_bra-miR159a:pmrd
Length = 185
Score = 228 bits (115), Expect = 1e-60
Identities = 162/179 (90%), Gaps = 5/179 (2%)
Strand = Plus / Plus
Query: 3 gctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatggatc 62
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 8 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
Query: 63 ccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcatatc 122
||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct: 68 ccataagccctaatccttatatata-----aaaaggatttggttatatggcttacatatc 122
Query: 123 ttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 181
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 181
>48339_bna-miR159:pmrd
Length = 183
Score = 228 bits (115), Expect = 1e-60
Identities = 162/179 (90%), Gaps = 5/179 (2%)
Strand = Plus / Plus
Query: 3 gctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatggatc 62
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 6 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 65
Query: 63 ccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcatatc 122
||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct: 66 ccataagccctaatccttatatata-----aaaaggatttggttatatggcttacatatc 120
Query: 123 ttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 181
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctc 179
>46931_ath-miR159a:pmrd
Length = 184
Score = 210 bits (106), Expect = 3e-55
Identities = 161/181 (88%), Gaps = 3/181 (1%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 4 gagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgga 63
Query: 61 tcccataagccctaatccttatagagagnnnnnnnnggatttggttatatggcttgcata 120
|||||||||||||||||||| || || |||||||||||||||| |||||||
Sbjct: 64 tcccataagccctaatccttgtaaag---taaaaaaggatttggttatatggattgcata 120
Query: 121 tcttaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 180
Query: 181 c 181
|
Sbjct: 181 c 181
>46932_ath-miR159b:pmrd
Length = 196
Score = 85.7 bits (43), Expect = 1e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gagctcctttaagttcaaacgagagtttagtagggtaaagaaaagctgctaagctatgga 60
||||||||| |||||||| ||| |||||| ||||| ||| |||||||||||||||||||
Sbjct: 5 gagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgga 64
Query: 61 tcccataagcc 71
|||||||||||
Sbjct: 65 tcccataagcc 75
Score = 60.0 bits (30), Expect = 6e-10
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 117 catatcttaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 175
||||||| ||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
Query: 176 gagctc 181
||||||
Sbjct: 181 gagctc 186
>54378_pvu-miR159:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctc 181
|||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctc 171
>54377_pvu-miR159:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctc 181
|||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctc 171
>48539_gma-miR159a:pmrd
Length = 214
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 cttctttggattgaagggagctc 181
|||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctc 193
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttctttggattgaagggagctc 181
||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctc 166
>54930_zma-miR159a:pmrd
Length = 246
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctc 225
>54674_tae-miR159b:pmrd
Length = 255
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctc 248
>54631_sof-miR159d:pmrd
Length = 265
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctc 244
>54629_sof-miR159b:pmrd
Length = 266
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctc 245
>54628_sof-miR159a:pmrd
Length = 265
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctc 244
>54392_sar-miR159:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctc 173
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aagctgctaagctatggatcc 63
|||||||||||||||||||||
Sbjct: 49 aagctgctaagctatggatcc 69
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 104 ggcttgcatatctcaggagcttta 127
>51604_ptc-miR159c:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aagctgctaagctatggatcc 63
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>51602_ptc-miR159a:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aagctgctaagctatggatcc 63
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>51338_pgl-miR159:pmrd
Length = 226
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctc 224
>48825_osa-miR159m:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctc 247
>48820_osa-miR159b:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctc 176
>48819_osa-miR159a:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctc 260
>48796_oru-miR159:pmrd
Length = 274
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 tctttggattgaagggagctc 181
|||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctc 260
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 ggcttgcatatcttaggagcttta 134
||||||||||||| ||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136
