miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 34
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 33 accgatcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 34
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 33 accgatcgataaacctctgcatccag 8
>51616_ptc-miR162a:pmrd
Length = 107
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 72
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 73 accgatcgataaacctctgcatccag 98
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 92 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 33
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 32 accgatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 94 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 35
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 34 accgatcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 94 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 35
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 34 accgatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 92 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 33
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 32 accgatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 13 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 72
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 73 accgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 63
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 13 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 72
Query: 64 accgatcgataaacctctgcatccag 89
||||||||||||||||||||||||||
Sbjct: 73 accgatcgataaacctctgcatccag 98
>54387_rco-miR162:pmrd
Length = 96
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctgg 33
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 catgaaccgatcgataaacctctgcatccag 89
|||||| ||||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccag 95
>48423_cpa-miR162a:pmrd
Length = 109
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctgg 33
||||||||||||||||||||||||||||||
Sbjct: 15 ggaggcagcggttcatcgatctcttcctgg 44
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 57 aacatgaaccgatcgataaacctctgcatccag 89
|||||||| ||||||||||||||||||||||||
Sbjct: 68 aacatgaatcgatcgataaacctctgcatccag 100
>48545_gma-miR162a:pmrd
Length = 102
Score = 58.0 bits (29), Expect = 1e-09
Identities = 69/82 (84%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 8 gcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatgaaccg 67
||||||||||||||||||||||||| | | ||||||| || | || |||||| ||
Sbjct: 16 gcagcggttcatcgatctcttcctg----aatcgttgtttaacatcagaaccatgaatcg 71
Query: 68 atcgataaacctctgcatccag 89
||||||||||||||||||||||
Sbjct: 72 atcgataaacctctgcatccag 93
>48493_ghr-miR162a:pmrd
Length = 148
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctg 32
|||||||||||||||||||||||||||||
Sbjct: 26 ggaggcagcggttcatcgatctcttcctg 54
>46937_ath-miR162a:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatctcttcctg 32
|||||||||||||||||||||||||||||
Sbjct: 27 ggaggcagcggttcatcgatctcttcctg 55
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 54 aaaaacatgaaccgatcgataaacctctgcatccag 89
|||| |||||| |||||||||||||||||||||||
Sbjct: 74 aaaagcatgaatagatcgataaacctctgcatccag 109
>48682_llu-miR162:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 catgaaccgatcgataaacctctgcatccag 89
|||||| ||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
>48707_mtr-miR162d:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 aaacatgaaccgatcgataaacctctgcatccag 89
||||||||| || |||||||||||||||||||||
Sbjct: 54 aaacatgaatcggtcgataaacctctgcatccag 87
>54784_vvi-miR162:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 gcagcggttcatcgatctcttcctg 32
|||||||||||||||||||||||||
Sbjct: 15 gcagcggttcatcgatctcttcctg 39
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tcgataaacctctgcatccag 89
|||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccag 93
>48706_mtr-miR162c:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 56 aaacatgaaccgatcgataaacctctgcatcca 88
||||||||| || ||||||||||||||||||||
Sbjct: 33 aaacatgaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 56 aaacatgaaccgatcgataaacctctgcatcca 88
||||||||| || ||||||||||||||||||||
Sbjct: 53 aaacatgaatcggtcgataaacctctgcatcca 85
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatccag 163
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 38 cgatcgataaacctctgcatccag 15
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 4 ggaggcagcggttcatcgatc 24
|||||||||||||||||||||
Sbjct: 100 ggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
||||||||||||||||||||||||
Sbjct: 76 cgatcgataaacctctgcatccag 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 ggaggcagcggttcatcgatc 24
|||||||||||||||||||||
Sbjct: 14 ggaggcagcggttcatcgatc 34
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tcgataaacctctgcatccag 89
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tcgataaacctctgcatccag 89
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tcgataaacctctgcatccag 89
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tcgataaacctctgcatccag 89
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
|||||||||| |||||||||||||
Sbjct: 91 cgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 cgatcgataaacctctgcatccag 89
|||||||||| |||||||||||||
Sbjct: 101 cgatcgataagcctctgcatccag 124
