miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51762_ptc-miR408:pmrd
Length = 105
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 73
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 74 ccatgcactgcctcttccctggc 96
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 3 cggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctaccc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctaccc 60
Query: 63 atgcactgcctcttccctg 81
|||||||||||||||||||
Sbjct: 61 atgcactgcctcttccctg 79
>54389_rco-miR408:pmrd
Length = 129
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 63
|||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 31 gggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacccc 90
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 91 tgcactgcctcttccctggc 110
>48428_cpt-miR408:pmrd
Length = 100
Score = 81.8 bits (41), Expect = 7e-17
Identities = 75/84 (89%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctcta 59
|||||||||||||||||||||||||||| | | |||||| || || |||||||||||
Sbjct: 9 gacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctcct 66
Query: 60 cccatgcactgcctcttccctggc 83
||||||||||||||||||||||||
Sbjct: 67 cccatgcactgcctcttccctggc 90
>54892_vvi-miR408:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tgtttttgctctacccatgcactgcctcttccctggc 97
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
||||||| |||||||||||||||||||||||||||||
Sbjct: 42 tgttttgtctctacccatgcactgcctcttccctggc 6
>47031_ath-miR408:pmrd
Length = 218
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
||||||| |||||||||||||||||||||||||||||
Sbjct: 104 tgttttgtctctacccatgcactgcctcttccctggc 140
>51347_ppe-miR408:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 59 tgttgtggctctactcatgcactgcctcttccctggc 95
>46892_aqc-miR408:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggc 2
>51397_ppt-miR408b:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggc 113
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ccatgcactgcctcttccctgg 82
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>54649_sof-miR408d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 acccatgcactgcctcttccctggc 83
|||| ||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggc 196
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 atgcactgcctcttccctggc 83
|||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 atgcactgcctcttccctggc 83
|||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84
>55104_zma-miR408:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggc 172
>54690_tae-miR408:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156
>54648_sof-miR408c:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54647_sof-miR408b:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54646_sof-miR408a:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggc 264
>54499_sbi-miR408:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggc 204
>48975_osa-miR408:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggc 173
