miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54532_sly-miR156a:pmrd
Length = 100
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaaaagc 64
Query: 61 atctcaattcatttgtgctctctatgcttctg 92
||||||||||||||||||||||||||||||||
Sbjct: 65 atctcaattcatttgtgctctctatgcttctg 96
>54661_stu-miR157a:pmrd
Length = 91
Score = 111 bits (56), Expect = 9e-26
Identities = 82/92 (89%), Gaps = 9/92 (9%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaaaagc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5 cagaagatagagagcactaatgatgatatgctaatttcatt---------cagcaaaagc 55
Query: 61 atctcaattcatttgtgctctctatgcttctg 92
|||||| |||||||||||||||||||||||||
Sbjct: 56 atctcacttcatttgtgctctctatgcttctg 87
>48790_nta-miR157:pmrd
Length = 131
Score = 71.9 bits (36), Expect = 8e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 55 aaaagcatctcaattcatttgtgctctctatgcttc 90
||||||||||||||||||||||||||||||||||||
Sbjct: 90 aaaagcatctcaattcatttgtgctctctatgcttc 125
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 7 cagaagatagagagcacagatgatgatatgc 37
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 60 tttgtgctctctatgcttctg 80
>51600_ptc-miR156j:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatgatatgc 45
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
>48698_mtr-miR157:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||| ||||||| ||||||||||
Sbjct: 5 cagaagatagagggcactaaggatgatatgc 35
>48695_mtr-miR156e:pmrd
Length = 172
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 10 cagaagatagagagcacagatgatgatatgc 40
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 144 tttgtgctctctatgcttctg 164
>48537_gma-miR157c:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||| ||||||| ||||
Sbjct: 80 cagaagatagagagcactgatgatgaaatgc 50
>48532_gma-miR156e:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||| ||||||| ||||
Sbjct: 25 cagaagatagagagcactgatgatgaaatgc 55
>48531_gma-miR156d:pmrd
Length = 151
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 25 cagaagatagagagcacagatgatgatatgc 55
>48393_bra-miR157a:pmrd
Length = 149
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 18 cagaagatagagagcactaaggatgacatgc 48
>48384_bol-miR157a:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 10 cagaagatagagagcactaaggatgacatgc 40
>48338_bna-miR156c:pmrd
Length = 155
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 22 cagaagatagagagcactaaggatgacatgc 52
>48337_bna-miR156b:pmrd
Length = 208
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 29 cagaagatagagagcactaaggatgacatgc 59
>46927_ath-miR157d:pmrd
Length = 221
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| |||| |||||
Sbjct: 27 cagaagatagagagcactaaggatgctatgc 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 59 gcatctcaattcatttgtgctctctatgcttctg 92
||||||| |||| | |||||||||||||||||||
Sbjct: 157 gcatctctattcctatgtgctctctatgcttctg 190
>46926_ath-miR157c:pmrd
Length = 217
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 28 cagaagatagagagcactaaggatgacatgc 58
>46862_aqc-miR156b:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 4 cagaagatagagagcacagatgatgatatgc 34
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 58 tttgtgctctctatgcttctg 78
>51599_ptc-miR156i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
>48631_gra-miR157b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 63 tttgtgctctctatgcttctg 83
>46861_aqc-miR156a:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tttgtgctctctatgcttctg 92
|||||||||||||||||||||
Sbjct: 56 tttgtgctctctatgcttctg 76
>54533_sly-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgctaatt 36
||||||||||||||||| ||| |||| ||||||||
Sbjct: 5 cagaagatagagagcacgaataatgaggtgctaatt 40
