miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51603_ptc-miR159b:pmrd
Length = 187
Score = 283 bits (143), Expect = 2e-77
Identities = 157/164 (95%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 72
Query: 61 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 132
Query: 121 tttattacctaatgttagatcnnnnnnnggattgaagggagctc 164
||||||||||||||||||||| ||||||||||||||||
Sbjct: 133 tttattacctaatgttagatctttttttggattgaagggagctc 176
>54777_vvi-miR159c:pmrd
Length = 190
Score = 83.8 bits (42), Expect = 4e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
|||||||||||||||||||||| | || | |||||||||| |||||||||| |||| ||
Sbjct: 11 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 70
Query: 61 cccacagccctatc 74
||||||||||||||
Sbjct: 71 cccacagccctatc 84
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 83.8 bits (42), Expect = 4e-17
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 98 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 157
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 101 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 160
Query: 158 ggagctc 164
|||||||
Sbjct: 161 ggagctc 167
>51604_ptc-miR159c:pmrd
Length = 183
Score = 83.8 bits (42), Expect = 4e-17
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 98 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 157
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 158 ggagctc 164
|||||||
Sbjct: 166 ggagctc 172
>51602_ptc-miR159a:pmrd
Length = 183
Score = 83.8 bits (42), Expect = 4e-17
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 98 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 157
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 158 ggagctc 164
|||||||
Sbjct: 166 ggagctc 172
>54378_pvu-miR159:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 1e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
||||||||||||||||||| || | || | |||||| ||| |||||||| ||||||| ||
Sbjct: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
Query: 61 cccacag 67
|||||||
Sbjct: 64 cccacag 70
>54377_pvu-miR159:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 1e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
||||||||||||||||||| || | || | |||||| ||| |||||||| ||||||| ||
Sbjct: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
Query: 61 cccacag 67
|||||||
Sbjct: 64 cccacag 70
>48539_gma-miR159a:pmrd
Length = 214
Score = 54.0 bits (27), Expect = 3e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
||||||||||||||||||| || | || | |||||| || |||||||| ||||||| ||
Sbjct: 23 gagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggat 82
Query: 61 cccacag 67
|||||||
Sbjct: 83 cccacag 89
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 ttgcatatctcaggagcttta 124
|||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134
>48395_bra-miR159a:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 ggcttgcatatctcaggagcttta 124
||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134
>48339_bna-miR159:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 101 ggcttgcatatctcaggagcttta 124
||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132
