miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48500_ghr-miR390c:pmrd
          Length = 114

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 70

                                               
Query: 61  atttgatcctcatatagcgctatccatcctgagttt 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 71  atttgatcctcatatagcgctatccatcctgagttt 106




>48499_ghr-miR390b:pmrd
          Length = 132

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18  aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 77

                                               
Query: 61  atttgatcctcatatagcgctatccatcctgagttt 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 78  atttgatcctcatatagcgctatccatcctgagttt 113




>48498_ghr-miR390a:pmrd
          Length = 124

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 74

                                               
Query: 61  atttgatcctcatatagcgctatccatcctgagttt 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 75  atttgatcctcatatagcgctatccatcctgagttt 110




>46996_ath-miR390b:pmrd
          Length = 120

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39




>54848_vvi-miR390:pmrd
          Length = 140

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34




>52711_ptc-miRf10889-akr:pmrd
          Length = 127

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 14 aagctcaggagggatagcgccatg 37




>51718_ptc-miR390c:pmrd
          Length = 123

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34




>51716_ptc-miR390a:pmrd
          Length = 119

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34




>48372_bna-miR390c:pmrd
          Length = 128

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatg 46




>48370_bna-miR390a:pmrd
          Length = 144

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56




>47212_ath-miRf10112-akr:pmrd
          Length = 107

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagttt 88




>47211_ath-miRf10111-akr:pmrd
          Length = 71

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcgccatg 24



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71




>46995_ath-miR390a:pmrd
          Length = 107

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagttt 88




>51391_ppt-miR390a:pmrd
          Length = 137

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38




>48729_mtr-miR390:pmrd
          Length = 90

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcgccat 23



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90




>48371_bna-miR390b:pmrd
          Length = 105

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccat 40




>55055_zma-miR390:pmrd
          Length = 177

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 1  aagctcaggagggatagcgcc 21




>53138_ptc-miRf11316-akr:pmrd
          Length = 94

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 4  aagctcaggagggatagcgcc 24



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91




>51719_ptc-miR390d:pmrd
          Length = 106

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98




>51717_ptc-miR390b:pmrd
          Length = 106

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gcgctatccatcctgagttt 96
          ||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98




>51392_ppt-miR390b:pmrd
          Length = 175

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48




>48916_osa-miR390:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>51394_ppt-miR390c:pmrd
          Length = 135

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agctcaggagggatagcgcc 21
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33




>51393_ppt-miR390c:pmrd
          Length = 135

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agctcaggagggatagcgcc 21
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33