miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54380_pvu-miR319c:pmrd
Length = 734
Score = 371 bits (187), Expect = e-103
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 aaggagcttccctcagcccattcatggatacaaaagattgggttgcaaaattaaccacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaggagcttccctcagcccattcatggatacaaaagattgggttgcaaaattaaccacta 303
Query: 61 actcattcacacaatagtattcagttagggtgatgctctttttgctataatatgattgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 actcattcacacaatagtattcagttagggtgatgctctttttgctataatatgattgtg 363
Query: 121 tgaatgaagtgatgcatacatattgtgtgaccctctttctctgagcttggactgaaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgaatgaagtgatgcatacatattgtgtgaccctctttctctgagcttggactgaaggga 423
Query: 181 gctcctt 187
|||||||
Sbjct: 424 gctcctt 430
>48574_gma-miR319c:pmrd
Length = 221
Score = 60.0 bits (30), Expect = 6e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 150 accctctttctctgagcttggactgaagggagctcctt 187
|||||||||||||| |||||||||||| ||||||||||
Sbjct: 166 accctctttctctgtgcttggactgaaaggagctcctt 203
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aaggagcttccctcagcccattcatgga 28
||||||||||||||||||||||||||||
Sbjct: 20 aaggagcttccctcagcccattcatgga 47
>51712_ptc-miR319f:pmrd
Length = 202
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 151 ccctctttctctgagcttggactgaagggagctcctt 187
|||||||| |||| |||||||||||||||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctcctt 194
>51351_ppl-miR319:pmrd
Length = 204
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 151 ccctctttctctgagcttggactgaagggagctcctt 187
|||||||| |||| |||||||||||||||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctcctt 194
>51710_ptc-miR319d:pmrd
Length = 193
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 157 ttctctgagcttggactgaagggagctcc 185
||||||| |||||||||||||||||||||
Sbjct: 155 ttctctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 157 ttctctgagcttggactgaagggagctcc 185
||||||| |||||||||||||||||||||
Sbjct: 158 ttctctgtgcttggactgaagggagctcc 186
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 157 ttctctgagcttggactgaagggagctc 184
||||||| ||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctc 170
>51713_ptc-miR319g:pmrd
Length = 204
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 160 tctgagcttggactgaagggagctcctt 187
|||| |||||||||||||||||||||||
Sbjct: 169 tctgtgcttggactgaagggagctcctt 196
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 160 tctgagcttggactgaagggagctcc 185
|||| |||||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
>46994_ath-miR319c:pmrd
Length = 199
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 154 tctttctctgagcttggactgaagggagctcctt 187
||||| |||| | |||||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctcctt 190
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 gcttggactgaagggagctcc 185
|||||||||||||||||||||
Sbjct: 149 gcttggactgaagggagctcc 169
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 gcttggactgaagggagctcc 185
|||||||||||||||||||||
Sbjct: 175 gcttggactgaagggagctcc 195
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcct 186
|||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcct 160
>46993_ath-miR319b:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 165 gcttggactgaagggagctcc 185
|||||||||||||||||||||
Sbjct: 150 gcttggactgaagggagctcc 170
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 ttggactgaagggagctcct 186
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 ttggactgaagggagctcct 186
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 ttggactgaagggagctcct 186
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 167 ttggactgaagggagctcct 186
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51707_ptc-miR319a:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>48573_gma-miR319b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 cttggactgaagggagctcc 185
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
