miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48395_bra-miR159a:pmrd
Length = 185
Score = 353 bits (178), Expect = 3e-98
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 agggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatga 64
Query: 61 atcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctc 124
Query: 121 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 353 bits (178), Expect = 3e-98
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 agggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 agggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatga 62
Query: 61 atcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 atcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctc 122
Query: 121 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 242 bits (122), Expect = 7e-65
Identities = 164/177 (92%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 4 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 63
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 6 gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 65
Query: 64 ccataagccctaatccttatatat--aaaaaggatttggttatatggcttacatatctca 121
|||||||||||||||||| || | ||||||||||||||||||||| || |||||||||
Sbjct: 66 ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 125
Query: 122 ggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 126 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctct 182
>46932_ath-miR159b:pmrd
Length = 196
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 4 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 63
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 7 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66
Query: 64 ccataagcc 72
|||||||||
Sbjct: 67 ccataagcc 75
Score = 69.9 bits (35), Expect = 6e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 113 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 171
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
Query: 172 gagctct 178
|||||||
Sbjct: 181 gagctct 187
>54378_pvu-miR159:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 155 cttctttggattgaagggagctct 178
||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 155 cttctttggattgaagggagctct 178
||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172
>48539_gma-miR159a:pmrd
Length = 214
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 155 cttctttggattgaagggagctct 178
||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctct 194
>48699_mtr-miR159a:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 156 ttctttggattgaagggagctct 178
|||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctct 167
>54930_zma-miR159a:pmrd
Length = 246
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>54631_sof-miR159d:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tctttggattgaagggagctct 178
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>54937_zma-miR159m:pmrd
Length = 457
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54931_zma-miR159b:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctct 201
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54673_tae-miR159a:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>54653_spr-miR159:pmrd
Length = 392
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 ggcttacatatctcaggagcttta 130
||||| ||||||||||||||||||
Sbjct: 104 ggcttgcatatctcaggagcttta 127
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 ggcttacatatctcaggagcttta 130
||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 ggcttacatatctcaggagcttta 130
||||| ||||||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 ggcttacatatctcaggagcttta 130
||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48701_mtr-miR159c:pmrd
Length = 44
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48657_hvv-miR159b:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48656_hvv-miR159a:pmrd
Length = 303
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggattgaagggagctct 178
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
