miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48954_osa-miR396f:pmrd
Length = 176
Score = 311 bits (157), Expect = 8e-86
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 69
Query: 61 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 129
Query: 121 atccccatcttgttgatagttcaagaaagtccttgga 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 130 atccccatcttgttgatagttcaagaaagtccttgga 166
>48953_osa-miR396f:pmrd
Length = 176
Score = 311 bits (157), Expect = 8e-86
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 69
Query: 61 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 129
Query: 121 atccccatcttgttgatagttcaagaaagtccttgga 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 130 atccccatcttgttgatagttcaagaaagtccttgga 166
>48952_osa-miR396f:pmrd
Length = 176
Score = 311 bits (157), Expect = 8e-86
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 69
Query: 61 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 129
Query: 121 atccccatcttgttgatagttcaagaaagtccttgga 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 130 atccccatcttgttgatagttcaagaaagtccttgga 166
>48797_oru-miR396:pmrd
Length = 178
Score = 311 bits (157), Expect = 8e-86
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatattgttctaga 70
Query: 61 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatgcgcatctgg 130
Query: 121 atccccatcttgttgatagttcaagaaagtccttgga 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 131 atccccatcttgttgatagttcaagaaagtccttgga 167
>55085_zma-miR396n:pmrd
Length = 186
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>55084_zma-miR396m:pmrd
Length = 227
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>55076_zma-miR396e:pmrd
Length = 186
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>55075_zma-miR396d:pmrd
Length = 186
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>54488_sbi-miR396e:pmrd
Length = 189
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>48951_osa-miR396e:pmrd
Length = 184
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcgtg 43
>48950_osa-miR396e:pmrd
Length = 184
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcgtg 43
>48949_osa-miR396e:pmrd
Length = 184
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcgtg 43
>48948_osa-miR396d:pmrd
Length = 142
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgtg 31
|||||||||||||||||||||||||||||||
Sbjct: 21 tccacaggctttcttgaactgtgaactcgtg 51
>48480_far-miR396:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 18 tccacaggctttcttgaactgtgaactcg 46
>48651_hvu-miR396:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||| ||||||
Sbjct: 13 tccacaggctttcttgaactgtcaactcg 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 132 gttgatagttcaagaaagtccttgga 157
|||||| |||||||||||||||||||
Sbjct: 70 gttgatggttcaagaaagtccttgga 95
